Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02635 and MMP_RS02640 are separated by 255 nucleotides MMP_RS02640 and MMP_RS02645 are separated by 131 nucleotides MMP_RS02645 and MMP_RS08945 are separated by 112 nucleotides MMP_RS08945 and MMP_RS02650 are separated by 38 nucleotides MMP_RS02650 and MMP_RS02655 are separated by 145 nucleotides
MMP_RS02635: MMP_RS02635 - class I SAM-dependent methyltransferase, at 501,162 to 501,839
_RS02635
MMP_RS02640: MMP_RS02640 - DUF6198 family protein, at 502,095 to 502,658
_RS02640
MMP_RS02645: MMP_RS02645 - ArsR family transcriptional regulator, at 502,790 to 503,530
_RS02645
MMP_RS08945: MMP_RS08945 - hypothetical protein, at 503,643 to 503,786
_RS08945
MMP_RS02650: MMP_RS02650 - flavodoxin family protein, at 503,825 to 504,376
_RS02650
MMP_RS02655: MMP_RS02655 - terpene cyclase/mutase family protein, at 504,522 to 506,024
_RS02655
Position (kb) 502
503
504 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 501.792 kb on + strand at 501.792 kb on + strand at 501.793 kb on - strand at 501.834 kb on + strand at 501.862 kb on - strand at 501.874 kb on - strand at 501.875 kb on + strand at 501.876 kb on - strand at 501.876 kb on - strand at 501.908 kb on + strand at 501.988 kb on - strand at 501.989 kb on + strand at 501.991 kb on + strand at 502.011 kb on - strand at 502.016 kb on - strand at 502.035 kb on - strand at 502.035 kb on - strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.036 kb on + strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.039 kb on - strand at 502.055 kb on + strand at 502.114 kb on - strand at 502.162 kb on + strand, within MMP_RS02640 at 502.162 kb on + strand, within MMP_RS02640 at 502.165 kb on - strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.166 kb on + strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.187 kb on - strand, within MMP_RS02640 at 502.188 kb on + strand, within MMP_RS02640 at 502.202 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.220 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.271 kb on + strand, within MMP_RS02640 at 502.272 kb on - strand, within MMP_RS02640 at 502.277 kb on + strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.309 kb on - strand, within MMP_RS02640 at 502.313 kb on - strand, within MMP_RS02640 at 502.316 kb on + strand, within MMP_RS02640 at 502.332 kb on + strand, within MMP_RS02640 at 502.333 kb on - strand, within MMP_RS02640 at 502.334 kb on + strand, within MMP_RS02640 at 502.347 kb on - strand, within MMP_RS02640 at 502.348 kb on + strand, within MMP_RS02640 at 502.355 kb on - strand, within MMP_RS02640 at 502.359 kb on - strand, within MMP_RS02640 at 502.364 kb on + strand, within MMP_RS02640 at 502.426 kb on - strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.550 kb on + strand, within MMP_RS02640 at 502.759 kb on - strand at 502.766 kb on - strand at 502.766 kb on - strand at 502.767 kb on + strand at 502.771 kb on - strand at 502.771 kb on - strand at 502.806 kb on - strand at 502.829 kb on - strand at 502.850 kb on + strand at 502.995 kb on + strand, within MMP_RS02645 at 503.067 kb on + strand, within MMP_RS02645 at 503.215 kb on - strand, within MMP_RS02645 at 503.219 kb on - strand, within MMP_RS02645 at 503.252 kb on - strand, within MMP_RS02645 at 503.282 kb on - strand, within MMP_RS02645 at 503.295 kb on - strand, within MMP_RS02645 at 503.332 kb on - strand, within MMP_RS02645 at 503.372 kb on + strand, within MMP_RS02645 at 503.408 kb on - strand, within MMP_RS02645 at 503.409 kb on + strand, within MMP_RS02645 at 503.411 kb on + strand, within MMP_RS02645 at 503.535 kb on + strand at 503.546 kb on + strand at 503.553 kb on - strand at 503.556 kb on + strand at 503.562 kb on - strand at 503.563 kb on + strand at 503.612 kb on - strand at 503.613 kb on + strand at 503.633 kb on + strand at 503.640 kb on + strand at 503.642 kb on - strand at 503.643 kb on + strand at 503.673 kb on + strand, within MMP_RS08945 at 503.673 kb on + strand, within MMP_RS08945 at 503.714 kb on + strand, within MMP_RS08945 at 503.720 kb on - strand, within MMP_RS08945 at 503.720 kb on - strand, within MMP_RS08945 at 503.721 kb on + strand, within MMP_RS08945 at 503.721 kb on + strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.732 kb on - strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.733 kb on + strand, within MMP_RS08945 at 503.734 kb on - strand, within MMP_RS08945 at 503.734 kb on - strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.735 kb on + strand, within MMP_RS08945 at 503.759 kb on - strand, within MMP_RS08945 at 503.778 kb on + strand at 503.785 kb on + strand at 503.785 kb on + strand at 503.812 kb on + strand at 503.812 kb on + strand at 503.833 kb on - strand at 503.928 kb on - strand, within MMP_RS02650 at 503.929 kb on + strand, within MMP_RS02650 at 503.954 kb on + strand, within MMP_RS02650 at 503.954 kb on + strand, within MMP_RS02650 at 503.983 kb on - strand, within MMP_RS02650 at 504.017 kb on + strand, within MMP_RS02650 at 504.125 kb on - strand, within MMP_RS02650 at 504.132 kb on - strand, within MMP_RS02650 at 504.186 kb on + strand, within MMP_RS02650 at 504.224 kb on - strand, within MMP_RS02650 at 504.225 kb on + strand, within MMP_RS02650 at 504.264 kb on - strand, within MMP_RS02650 at 504.424 kb on - strand at 504.425 kb on + strand at 504.427 kb on + strand at 504.457 kb on + strand at 504.506 kb on - strand at 504.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 501,792 + +0.1 501,792 + -0.2 501,793 - +0.7 501,834 + +0.2 501,862 - -1.9 501,874 - -0.0 501,875 + -0.1 501,876 - -0.3 501,876 - -1.0 501,908 + -0.8 501,988 - -0.2 501,989 + +0.0 501,991 + -0.1 502,011 - +0.1 502,016 - +0.0 502,035 - +0.4 502,035 - -0.1 502,036 + +0.6 502,036 + +0.1 502,036 + +0.6 502,036 + -0.1 502,039 - +0.0 502,039 - +0.6 502,039 - +0.4 502,055 + -0.2 502,114 - +0.3 502,162 + MMP_RS02640 0.12 +0.3 502,162 + MMP_RS02640 0.12 +0.3 502,165 - MMP_RS02640 0.12 -0.1 502,166 + MMP_RS02640 0.13 -0.8 502,166 + MMP_RS02640 0.13 +0.6 502,187 - MMP_RS02640 0.16 +0.2 502,187 - MMP_RS02640 0.16 +0.1 502,188 + MMP_RS02640 0.16 +0.3 502,202 + MMP_RS02640 0.19 -0.8 502,220 + MMP_RS02640 0.22 +0.1 502,220 + MMP_RS02640 0.22 +0.8 502,220 + MMP_RS02640 0.22 +1.1 502,220 + MMP_RS02640 0.22 -0.4 502,271 + MMP_RS02640 0.31 -0.3 502,271 + MMP_RS02640 0.31 +0.3 502,272 - MMP_RS02640 0.31 +0.6 502,277 + MMP_RS02640 0.32 +0.0 502,309 - MMP_RS02640 0.38 -0.8 502,309 - MMP_RS02640 0.38 +0.7 502,313 - MMP_RS02640 0.39 -0.0 502,316 + MMP_RS02640 0.39 +0.1 502,332 + MMP_RS02640 0.42 +0.3 502,333 - MMP_RS02640 0.42 -0.6 502,334 + MMP_RS02640 0.42 -0.1 502,347 - MMP_RS02640 0.45 +0.0 502,348 + MMP_RS02640 0.45 +0.2 502,355 - MMP_RS02640 0.46 -0.3 502,359 - MMP_RS02640 0.47 -0.1 502,364 + MMP_RS02640 0.48 +0.6 502,426 - MMP_RS02640 0.59 -0.0 502,550 + MMP_RS02640 0.81 -0.7 502,550 + MMP_RS02640 0.81 +0.5 502,759 - -0.5 502,766 - +0.4 502,766 - +0.2 502,767 + -0.4 502,771 - -0.1 502,771 - -0.2 502,806 - -3.6 502,829 - -3.3 502,850 + -3.2 502,995 + MMP_RS02645 0.28 -3.0 503,067 + MMP_RS02645 0.37 -2.2 503,215 - MMP_RS02645 0.57 -2.4 503,219 - MMP_RS02645 0.58 -2.9 503,252 - MMP_RS02645 0.62 -2.9 503,282 - MMP_RS02645 0.66 -2.8 503,295 - MMP_RS02645 0.68 -3.1 503,332 - MMP_RS02645 0.73 -3.9 503,372 + MMP_RS02645 0.79 -3.3 503,408 - MMP_RS02645 0.83 -2.9 503,409 + MMP_RS02645 0.84 -4.0 503,411 + MMP_RS02645 0.84 -3.4 503,535 + -0.8 503,546 + -2.6 503,553 - -2.0 503,556 + -3.7 503,562 - -2.8 503,563 + -2.9 503,612 - -4.7 503,613 + -3.3 503,633 + -3.1 503,640 + -3.6 503,642 - -4.5 503,643 + -3.6 503,673 + MMP_RS08945 0.21 -3.2 503,673 + MMP_RS08945 0.21 -3.3 503,714 + MMP_RS08945 0.49 -2.7 503,720 - MMP_RS08945 0.53 -4.2 503,720 - MMP_RS08945 0.53 -4.2 503,721 + MMP_RS08945 0.54 -2.9 503,721 + MMP_RS08945 0.54 -4.0 503,732 - MMP_RS08945 0.62 -3.2 503,732 - MMP_RS08945 0.62 -3.3 503,732 - MMP_RS08945 0.62 -2.8 503,733 + MMP_RS08945 0.62 -3.2 503,733 + MMP_RS08945 0.62 -3.2 503,733 + MMP_RS08945 0.62 -1.5 503,734 - MMP_RS08945 0.63 -3.3 503,734 - MMP_RS08945 0.63 -2.8 503,735 + MMP_RS08945 0.64 -2.6 503,735 + MMP_RS08945 0.64 -4.4 503,735 + MMP_RS08945 0.64 -2.7 503,759 - MMP_RS08945 0.81 -3.4 503,778 + -3.7 503,785 + -2.7 503,785 + -2.8 503,812 + -3.2 503,812 + -3.1 503,833 - -3.3 503,928 - MMP_RS02650 0.19 -1.4 503,929 + MMP_RS02650 0.19 -3.7 503,954 + MMP_RS02650 0.23 -3.2 503,954 + MMP_RS02650 0.23 -3.7 503,983 - MMP_RS02650 0.29 -2.8 504,017 + MMP_RS02650 0.35 -3.0 504,125 - MMP_RS02650 0.54 -3.1 504,132 - MMP_RS02650 0.56 -2.5 504,186 + MMP_RS02650 0.65 -4.1 504,224 - MMP_RS02650 0.72 -3.6 504,225 + MMP_RS02650 0.72 -3.1 504,264 - MMP_RS02650 0.80 -5.7 504,424 - -0.7 504,425 + -3.3 504,427 + -2.7 504,457 + +0.6 504,506 - +0.4 504,528 + +0.0
Or see this region's nucleotide sequence