Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02620

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02615 and MMP_RS02620 are separated by 598 nucleotidesMMP_RS02620 and MMP_RS02625 overlap by 7 nucleotides MMP_RS02615: MMP_RS02615 - cobaltochelatase subunit CobN, at 489,237 to 495,425 _RS02615 MMP_RS02620: MMP_RS02620 - DEAD/DEAH box helicase, at 496,024 to 498,303 _RS02620 MMP_RS02625: MMP_RS02625 - ribonuclease H-like domain-containing protein, at 498,297 to 499,391 _RS02625 Position (kb) 496 497 498 499Strain fitness (log2 ratio) -2 -1 0 1at 495.360 kb on + strandat 495.378 kb on + strandat 495.379 kb on - strandat 495.435 kb on - strandat 495.469 kb on + strandat 495.483 kb on + strandat 495.486 kb on - strandat 495.572 kb on - strandat 495.612 kb on - strandat 495.613 kb on + strandat 495.640 kb on - strandat 495.641 kb on + strandat 495.725 kb on + strandat 495.744 kb on - strandat 495.744 kb on - strandat 495.745 kb on + strandat 495.745 kb on + strandat 495.745 kb on + strandat 495.746 kb on - strandat 495.746 kb on - strandat 495.746 kb on - strandat 495.747 kb on + strandat 495.747 kb on + strandat 495.747 kb on + strandat 495.748 kb on - strandat 495.749 kb on + strandat 495.830 kb on + strandat 495.850 kb on - strandat 495.850 kb on - strandat 495.851 kb on + strandat 495.960 kb on + strandat 495.983 kb on - strandat 495.989 kb on + strandat 495.991 kb on + strandat 496.015 kb on - strandat 496.015 kb on - strandat 496.279 kb on + strand, within MMP_RS02620at 496.318 kb on - strand, within MMP_RS02620at 496.320 kb on - strand, within MMP_RS02620at 496.518 kb on - strand, within MMP_RS02620at 496.519 kb on + strand, within MMP_RS02620at 496.519 kb on + strand, within MMP_RS02620at 496.523 kb on - strand, within MMP_RS02620at 496.531 kb on + strand, within MMP_RS02620at 496.534 kb on - strand, within MMP_RS02620at 496.594 kb on + strand, within MMP_RS02620at 496.651 kb on + strand, within MMP_RS02620at 496.659 kb on - strand, within MMP_RS02620at 496.663 kb on - strand, within MMP_RS02620at 496.663 kb on - strand, within MMP_RS02620at 496.664 kb on + strand, within MMP_RS02620at 496.690 kb on - strand, within MMP_RS02620at 496.690 kb on - strand, within MMP_RS02620at 496.697 kb on - strand, within MMP_RS02620at 496.888 kb on - strand, within MMP_RS02620at 497.074 kb on - strand, within MMP_RS02620at 497.411 kb on + strand, within MMP_RS02620at 497.511 kb on - strand, within MMP_RS02620at 497.512 kb on + strand, within MMP_RS02620at 497.584 kb on - strand, within MMP_RS02620at 497.633 kb on + strand, within MMP_RS02620at 497.654 kb on - strand, within MMP_RS02620at 497.683 kb on - strand, within MMP_RS02620at 497.697 kb on - strand, within MMP_RS02620at 497.720 kb on - strand, within MMP_RS02620at 497.720 kb on - strand, within MMP_RS02620at 497.721 kb on + strand, within MMP_RS02620at 497.741 kb on + strand, within MMP_RS02620at 497.792 kb on + strand, within MMP_RS02620at 497.863 kb on + strand, within MMP_RS02620at 497.883 kb on + strand, within MMP_RS02620at 498.089 kb on + strandat 498.119 kb on - strandat 498.167 kb on + strandat 498.231 kb on - strandat 498.320 kb on - strandat 498.339 kb on - strandat 498.348 kb on - strandat 498.348 kb on - strandat 498.348 kb on - strandat 498.363 kb on - strandat 498.403 kb on - strandat 498.404 kb on + strandat 498.465 kb on - strand, within MMP_RS02625at 498.480 kb on + strand, within MMP_RS02625at 498.580 kb on - strand, within MMP_RS02625at 498.603 kb on + strand, within MMP_RS02625at 498.612 kb on + strand, within MMP_RS02625at 498.810 kb on - strand, within MMP_RS02625at 498.822 kb on - strand, within MMP_RS02625at 498.884 kb on - strand, within MMP_RS02625at 499.068 kb on - strand, within MMP_RS02625at 499.124 kb on + strand, within MMP_RS02625at 499.165 kb on - strand, within MMP_RS02625at 499.173 kb on - strand, within MMP_RS02625

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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495,360 + +0.4
495,378 + -0.0
495,379 - +0.8
495,435 - -0.3
495,469 + -0.1
495,483 + +0.3
495,486 - -0.7
495,572 - +0.2
495,612 - +1.0
495,613 + +0.1
495,640 - +0.8
495,641 + -0.5
495,725 + +0.4
495,744 - -0.0
495,744 - +0.3
495,745 + -0.8
495,745 + +0.6
495,745 + +0.2
495,746 - -0.0
495,746 - +0.5
495,746 - +0.1
495,747 + +0.3
495,747 + -0.1
495,747 + +0.7
495,748 - -0.3
495,749 + -0.5
495,830 + -0.0
495,850 - +0.1
495,850 - -0.2
495,851 + +0.6
495,960 + -0.1
495,983 - -0.4
495,989 + +0.5
495,991 + +0.1
496,015 - +0.3
496,015 - +0.2
496,279 + MMP_RS02620 0.11 +0.2
496,318 - MMP_RS02620 0.13 -0.1
496,320 - MMP_RS02620 0.13 +0.6
496,518 - MMP_RS02620 0.22 -0.0
496,519 + MMP_RS02620 0.22 -0.3
496,519 + MMP_RS02620 0.22 -0.7
496,523 - MMP_RS02620 0.22 -0.1
496,531 + MMP_RS02620 0.22 +0.2
496,534 - MMP_RS02620 0.22 -0.6
496,594 + MMP_RS02620 0.25 -0.2
496,651 + MMP_RS02620 0.28 +0.1
496,659 - MMP_RS02620 0.28 +0.3
496,663 - MMP_RS02620 0.28 +0.7
496,663 - MMP_RS02620 0.28 +0.4
496,664 + MMP_RS02620 0.28 +0.2
496,690 - MMP_RS02620 0.29 +0.3
496,690 - MMP_RS02620 0.29 -0.0
496,697 - MMP_RS02620 0.30 -0.0
496,888 - MMP_RS02620 0.38 +0.4
497,074 - MMP_RS02620 0.46 -0.4
497,411 + MMP_RS02620 0.61 -0.3
497,511 - MMP_RS02620 0.65 +0.1
497,512 + MMP_RS02620 0.65 -0.4
497,584 - MMP_RS02620 0.68 +0.2
497,633 + MMP_RS02620 0.71 -0.0
497,654 - MMP_RS02620 0.71 -0.0
497,683 - MMP_RS02620 0.73 +0.3
497,697 - MMP_RS02620 0.73 +0.3
497,720 - MMP_RS02620 0.74 +0.3
497,720 - MMP_RS02620 0.74 -2.6
497,721 + MMP_RS02620 0.74 -0.0
497,741 + MMP_RS02620 0.75 +0.6
497,792 + MMP_RS02620 0.78 -0.0
497,863 + MMP_RS02620 0.81 +0.3
497,883 + MMP_RS02620 0.82 -1.0
498,089 + +0.4
498,119 - +0.5
498,167 + -0.4
498,231 - +0.2
498,320 - +0.2
498,339 - +0.3
498,348 - +0.3
498,348 - -1.6
498,348 - -0.2
498,363 - +0.5
498,403 - +0.3
498,404 + -0.3
498,465 - MMP_RS02625 0.15 -0.2
498,480 + MMP_RS02625 0.17 +0.8
498,580 - MMP_RS02625 0.26 -0.2
498,603 + MMP_RS02625 0.28 -1.3
498,612 + MMP_RS02625 0.29 -0.2
498,810 - MMP_RS02625 0.47 -1.2
498,822 - MMP_RS02625 0.48 +0.3
498,884 - MMP_RS02625 0.54 +0.3
499,068 - MMP_RS02625 0.70 +0.1
499,124 + MMP_RS02625 0.76 +0.2
499,165 - MMP_RS02625 0.79 +0.3
499,173 - MMP_RS02625 0.80 +0.0

Or see this region's nucleotide sequence