Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02290 and MMP_RS02295 are separated by 170 nucleotides MMP_RS02295 and MMP_RS02300 are separated by 18 nucleotides MMP_RS02300 and MMP_RS02305 are separated by 38 nucleotides
MMP_RS02290: MMP_RS02290 - MBL fold metallo-hydrolase, at 431,730 to 433,031
_RS02290
MMP_RS02295: MMP_RS02295 - TatD family hydrolase, at 433,202 to 433,963
_RS02295
MMP_RS02300: MMP_RS02300 - NAD(P)H-dependent oxidoreductase, at 433,982 to 434,476
_RS02300
MMP_RS02305: MMP_RS02305 - DUF378 domain-containing protein, at 434,515 to 434,763
_RS02305
Position (kb) 433
434 Strain fitness (log2 ratio) -1
0
1
2 at 432.242 kb on + strand, within MMP_RS02290 at 432.286 kb on - strand, within MMP_RS02290 at 432.318 kb on - strand, within MMP_RS02290 at 432.454 kb on - strand, within MMP_RS02290 at 432.959 kb on - strand at 433.063 kb on - strand at 433.064 kb on + strand at 433.077 kb on - strand at 433.079 kb on - strand at 433.090 kb on + strand at 433.102 kb on + strand at 433.131 kb on - strand at 433.403 kb on + strand, within MMP_RS02295 at 433.635 kb on - strand, within MMP_RS02295 at 433.677 kb on - strand, within MMP_RS02295 at 433.707 kb on - strand, within MMP_RS02295 at 433.800 kb on + strand, within MMP_RS02295 at 433.825 kb on - strand, within MMP_RS02295 at 433.826 kb on + strand, within MMP_RS02295 at 433.831 kb on - strand, within MMP_RS02295 at 433.831 kb on - strand, within MMP_RS02295 at 433.832 kb on + strand, within MMP_RS02295 at 433.852 kb on - strand, within MMP_RS02295 at 433.852 kb on - strand, within MMP_RS02295 at 433.853 kb on + strand, within MMP_RS02295 at 433.854 kb on - strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.855 kb on + strand, within MMP_RS02295 at 433.930 kb on - strand at 433.933 kb on - strand at 433.933 kb on - strand at 433.947 kb on - strand at 433.961 kb on - strand at 433.979 kb on - strand at 433.981 kb on - strand at 434.007 kb on + strand at 434.007 kb on + strand at 434.009 kb on - strand at 434.033 kb on - strand, within MMP_RS02300 at 434.199 kb on + strand, within MMP_RS02300 at 434.207 kb on + strand, within MMP_RS02300 at 434.208 kb on - strand, within MMP_RS02300 at 434.332 kb on - strand, within MMP_RS02300 at 434.449 kb on - strand at 434.449 kb on - strand at 434.456 kb on - strand at 434.457 kb on + strand at 434.457 kb on + strand at 434.474 kb on - strand at 434.532 kb on + strand at 434.535 kb on + strand at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.543 kb on - strand, within MMP_RS02305 at 434.544 kb on + strand, within MMP_RS02305 at 434.544 kb on + strand, within MMP_RS02305 at 434.544 kb on + strand, within MMP_RS02305 at 434.572 kb on - strand, within MMP_RS02305 at 434.653 kb on + strand, within MMP_RS02305 at 434.665 kb on - strand, within MMP_RS02305 at 434.679 kb on - strand, within MMP_RS02305 at 434.680 kb on + strand, within MMP_RS02305 at 434.680 kb on + strand, within MMP_RS02305 at 434.728 kb on + strand, within MMP_RS02305 at 434.803 kb on - strand at 434.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 432,242 + MMP_RS02290 0.39 +0.3 432,286 - MMP_RS02290 0.43 +0.1 432,318 - MMP_RS02290 0.45 +0.2 432,454 - MMP_RS02290 0.56 +0.4 432,959 - +0.8 433,063 - +0.3 433,064 + +0.0 433,077 - -0.6 433,079 - +0.1 433,090 + -0.4 433,102 + +0.9 433,131 - +0.7 433,403 + MMP_RS02295 0.26 -0.4 433,635 - MMP_RS02295 0.57 -0.8 433,677 - MMP_RS02295 0.62 +0.9 433,707 - MMP_RS02295 0.66 +0.7 433,800 + MMP_RS02295 0.78 +0.4 433,825 - MMP_RS02295 0.82 +0.7 433,826 + MMP_RS02295 0.82 +0.3 433,831 - MMP_RS02295 0.83 +0.2 433,831 - MMP_RS02295 0.83 +0.6 433,832 + MMP_RS02295 0.83 -0.2 433,852 - MMP_RS02295 0.85 -0.0 433,852 - MMP_RS02295 0.85 +0.4 433,853 + MMP_RS02295 0.85 -0.1 433,854 - MMP_RS02295 0.86 +0.7 433,855 + MMP_RS02295 0.86 -0.3 433,855 + MMP_RS02295 0.86 +0.2 433,855 + MMP_RS02295 0.86 +0.4 433,855 + MMP_RS02295 0.86 -0.1 433,855 + MMP_RS02295 0.86 +0.4 433,930 - +0.8 433,933 - -0.1 433,933 - +0.2 433,947 - +0.4 433,961 - -0.1 433,979 - -0.1 433,981 - +0.5 434,007 + -0.4 434,007 + +0.5 434,009 - -0.2 434,033 - MMP_RS02300 0.10 +0.5 434,199 + MMP_RS02300 0.44 +0.1 434,207 + MMP_RS02300 0.45 -0.1 434,208 - MMP_RS02300 0.46 +0.6 434,332 - MMP_RS02300 0.71 -0.1 434,449 - +0.6 434,449 - -0.4 434,456 - +0.6 434,457 + -0.3 434,457 + +0.0 434,474 - +0.4 434,532 + +1.8 434,535 + -0.2 434,543 - MMP_RS02305 0.11 +0.3 434,543 - MMP_RS02305 0.11 -0.1 434,543 - MMP_RS02305 0.11 +0.3 434,543 - MMP_RS02305 0.11 -0.0 434,543 - MMP_RS02305 0.11 -1.0 434,543 - MMP_RS02305 0.11 -0.0 434,543 - MMP_RS02305 0.11 +0.3 434,543 - MMP_RS02305 0.11 +0.1 434,543 - MMP_RS02305 0.11 +0.1 434,544 + MMP_RS02305 0.12 -0.1 434,544 + MMP_RS02305 0.12 +0.1 434,544 + MMP_RS02305 0.12 -0.4 434,572 - MMP_RS02305 0.23 -0.1 434,653 + MMP_RS02305 0.55 +0.4 434,665 - MMP_RS02305 0.60 +0.0 434,679 - MMP_RS02305 0.66 -0.4 434,680 + MMP_RS02305 0.66 -0.1 434,680 + MMP_RS02305 0.66 +0.2 434,728 + MMP_RS02305 0.86 -0.1 434,803 - +0.2 434,803 - +0.4
Or see this region's nucleotide sequence