Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02200

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02195 and MMP_RS02200 are separated by 150 nucleotidesMMP_RS02200 and MMP_RS02205 are separated by 62 nucleotides MMP_RS02195: MMP_RS02195 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase, at 410,405 to 411,682 _RS02195 MMP_RS02200: MMP_RS02200 - methyl-accepting chemotaxis protein, at 411,833 to 414,028 _RS02200 MMP_RS02205: MMP_RS02205 - threonine--tRNA ligase, at 414,091 to 415,959 _RS02205 Position (kb) 411 412 413 414 415Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 410.845 kb on - strand, within MMP_RS02195at 410.872 kb on - strand, within MMP_RS02195at 410.884 kb on + strand, within MMP_RS02195at 411.366 kb on - strand, within MMP_RS02195at 411.484 kb on + strand, within MMP_RS02195at 411.540 kb on - strand, within MMP_RS02195at 411.560 kb on + strandat 411.580 kb on - strandat 411.581 kb on + strandat 411.710 kb on - strandat 411.743 kb on - strandat 411.743 kb on - strandat 411.744 kb on + strandat 411.782 kb on - strandat 411.783 kb on + strandat 411.784 kb on - strandat 411.784 kb on - strandat 411.784 kb on - strandat 411.784 kb on - strandat 411.784 kb on - strandat 411.785 kb on + strandat 411.785 kb on + strandat 411.786 kb on - strandat 411.786 kb on - strandat 411.786 kb on - strandat 411.786 kb on - strandat 411.786 kb on - strandat 411.786 kb on - strandat 411.787 kb on + strandat 411.787 kb on + strandat 411.787 kb on + strandat 411.787 kb on + strandat 411.806 kb on + strandat 411.817 kb on - strandat 411.818 kb on + strandat 411.819 kb on - strandat 411.819 kb on - strandat 411.819 kb on - strandat 411.895 kb on + strandat 411.928 kb on - strandat 411.931 kb on - strandat 411.938 kb on + strandat 412.053 kb on + strand, within MMP_RS02200at 412.093 kb on + strand, within MMP_RS02200at 412.201 kb on - strand, within MMP_RS02200at 412.202 kb on + strand, within MMP_RS02200at 412.291 kb on - strand, within MMP_RS02200at 412.349 kb on + strand, within MMP_RS02200at 412.540 kb on + strand, within MMP_RS02200at 412.616 kb on - strand, within MMP_RS02200at 412.617 kb on + strand, within MMP_RS02200at 412.617 kb on + strand, within MMP_RS02200at 412.645 kb on - strand, within MMP_RS02200at 412.714 kb on - strand, within MMP_RS02200at 412.715 kb on + strand, within MMP_RS02200at 412.715 kb on + strand, within MMP_RS02200at 412.718 kb on + strand, within MMP_RS02200at 412.727 kb on + strand, within MMP_RS02200at 412.783 kb on - strand, within MMP_RS02200at 412.807 kb on + strand, within MMP_RS02200at 412.975 kb on + strand, within MMP_RS02200at 412.990 kb on - strand, within MMP_RS02200at 413.407 kb on - strand, within MMP_RS02200at 413.416 kb on + strand, within MMP_RS02200at 413.492 kb on + strand, within MMP_RS02200at 413.688 kb on - strand, within MMP_RS02200at 413.689 kb on + strand, within MMP_RS02200at 414.023 kb on + strandat 414.043 kb on + strandat 414.976 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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410,845 - MMP_RS02195 0.34 -2.6
410,872 - MMP_RS02195 0.37 -2.4
410,884 + MMP_RS02195 0.37 -2.6
411,366 - MMP_RS02195 0.75 -2.6
411,484 + MMP_RS02195 0.84 -4.1
411,540 - MMP_RS02195 0.89 -1.2
411,560 + -1.2
411,580 - -3.0
411,581 + -2.4
411,710 - +0.6
411,743 - +0.9
411,743 - +0.1
411,744 + +0.3
411,782 - -0.1
411,783 + +0.3
411,784 - +0.7
411,784 - +0.8
411,784 - -0.1
411,784 - +0.2
411,784 - -0.1
411,785 + +0.7
411,785 + +0.2
411,786 - -0.8
411,786 - -0.1
411,786 - +0.2
411,786 - +0.2
411,786 - +0.2
411,786 - -0.1
411,787 + +0.8
411,787 + -0.2
411,787 + +1.1
411,787 + +0.0
411,806 + +0.6
411,817 - -0.7
411,818 + +0.1
411,819 - +0.0
411,819 - -0.1
411,819 - -0.0
411,895 + -0.6
411,928 - +0.2
411,931 - -0.0
411,938 + -0.2
412,053 + MMP_RS02200 0.10 -0.1
412,093 + MMP_RS02200 0.12 +0.2
412,201 - MMP_RS02200 0.17 -0.1
412,202 + MMP_RS02200 0.17 -0.7
412,291 - MMP_RS02200 0.21 -0.9
412,349 + MMP_RS02200 0.23 +0.3
412,540 + MMP_RS02200 0.32 +0.3
412,616 - MMP_RS02200 0.36 +0.3
412,617 + MMP_RS02200 0.36 -0.1
412,617 + MMP_RS02200 0.36 +0.2
412,645 - MMP_RS02200 0.37 +0.2
412,714 - MMP_RS02200 0.40 +0.6
412,715 + MMP_RS02200 0.40 +0.2
412,715 + MMP_RS02200 0.40 -0.2
412,718 + MMP_RS02200 0.40 +0.2
412,727 + MMP_RS02200 0.41 +0.2
412,783 - MMP_RS02200 0.43 -0.4
412,807 + MMP_RS02200 0.44 +0.5
412,975 + MMP_RS02200 0.52 -0.1
412,990 - MMP_RS02200 0.53 +0.2
413,407 - MMP_RS02200 0.72 +0.0
413,416 + MMP_RS02200 0.72 +1.0
413,492 + MMP_RS02200 0.76 -0.4
413,688 - MMP_RS02200 0.84 -0.4
413,689 + MMP_RS02200 0.85 +0.2
414,023 + -0.0
414,043 + -0.4
414,976 - -1.8

Or see this region's nucleotide sequence