Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02040 and MMP_RS02045 are separated by 213 nucleotides MMP_RS02045 and MMP_RS02050 are separated by 86 nucleotides MMP_RS02050 and MMP_RS02055 are separated by 114 nucleotides MMP_RS02055 and MMP_RS02060 are separated by 105 nucleotides
MMP_RS02040: MMP_RS02040 - S-layer protein, at 381,781 to 383,508
_RS02040
MMP_RS02045: MMP_RS02045 - tRNA-Met, at 383,722 to 383,800
_RS02045
MMP_RS02050: MMP_RS02050 - tRNA-Met, at 383,887 to 383,965
_RS02050
MMP_RS02055: MMP_RS02055 - DUF2116 family Zn-ribbon domain-containing protein, at 384,080 to 384,262
_RS02055
MMP_RS02060: MMP_RS02060 - UMP kinase, at 384,368 to 385,045
_RS02060
Position (kb)
383
384 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 383.511 kb on + strand at 383.622 kb on - strand at 383.623 kb on + strand at 383.690 kb on - strand at 383.695 kb on + strand at 383.707 kb on - strand at 383.792 kb on - strand, within MMP_RS02045 at 383.822 kb on - strand at 384.007 kb on - strand at 384.096 kb on - strand at 384.097 kb on + strand at 384.097 kb on + strand at 384.306 kb on - strand at 384.307 kb on + strand at 384.310 kb on - strand at 384.354 kb on + strand at 384.740 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 383,511 + -0.1 383,622 - -0.3 383,623 + +0.3 383,690 - -0.9 383,695 + -0.8 383,707 - -0.2 383,792 - MMP_RS02045 0.89 +0.5 383,822 - -0.2 384,007 - -1.8 384,096 - -0.0 384,097 + +0.5 384,097 + +0.4 384,306 - +0.2 384,307 + -1.1 384,310 - -0.2 384,354 + +0.2 384,740 + -3.0
Or see this region's nucleotide sequence