Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01640 and MMP_RS01645 are separated by 72 nucleotides MMP_RS01645 and MMP_RS01650 are separated by 156 nucleotides MMP_RS01650 and MMP_RS01655 are separated by 9 nucleotides MMP_RS01655 and MMP_RS01660 are separated by 124 nucleotides
MMP_RS01640: MMP_RS01640 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 303,341 to 305,053
_RS01640
MMP_RS01645: MMP_RS01645 - SWIM zinc finger family protein, at 305,126 to 305,815
_RS01645
MMP_RS01650: MMP_RS01650 - sulfurtransferase TusA family protein, at 305,972 to 306,184
_RS01650
MMP_RS01655: MMP_RS01655 - DsrE family protein, at 306,194 to 306,538
_RS01655
MMP_RS01660: MMP_RS01660 - hypothetical protein, at 306,663 to 307,247
_RS01660
Position (kb)
305
306
307 Strain fitness (log2 ratio)
-2
-1
0
1 at 304.975 kb on - strand at 305.071 kb on - strand at 305.078 kb on + strand at 305.096 kb on + strand at 305.097 kb on - strand at 305.097 kb on - strand at 305.097 kb on - strand at 305.098 kb on + strand at 305.139 kb on - strand at 305.139 kb on - strand at 305.139 kb on - strand at 305.139 kb on - strand at 305.140 kb on + strand at 305.140 kb on + strand at 305.140 kb on + strand at 305.140 kb on + strand at 305.141 kb on - strand at 305.142 kb on + strand at 305.142 kb on + strand at 305.142 kb on + strand at 305.380 kb on + strand, within MMP_RS01645 at 305.542 kb on + strand, within MMP_RS01645 at 305.625 kb on - strand, within MMP_RS01645 at 305.630 kb on - strand, within MMP_RS01645 at 305.773 kb on - strand at 305.792 kb on - strand at 305.792 kb on - strand at 305.884 kb on + strand at 306.118 kb on - strand, within MMP_RS01650 at 306.169 kb on + strand at 306.174 kb on - strand at 306.210 kb on - strand at 306.323 kb on - strand, within MMP_RS01655 at 306.365 kb on - strand, within MMP_RS01655 at 306.499 kb on + strand, within MMP_RS01655 at 306.521 kb on + strand at 306.545 kb on - strand at 306.558 kb on - strand at 306.590 kb on + strand at 306.603 kb on - strand at 306.617 kb on - strand at 306.622 kb on - strand at 306.636 kb on - strand at 306.636 kb on - strand at 306.641 kb on - strand at 306.647 kb on + strand at 306.663 kb on + strand at 306.663 kb on + strand at 306.744 kb on - strand, within MMP_RS01660 at 306.745 kb on + strand, within MMP_RS01660 at 306.756 kb on + strand, within MMP_RS01660 at 306.999 kb on + strand, within MMP_RS01660
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 304,975 - +0.6 305,071 - -0.3 305,078 + -0.3 305,096 + -0.7 305,097 - +0.3 305,097 - -0.5 305,097 - -0.0 305,098 + +0.1 305,139 - +0.3 305,139 - -0.5 305,139 - +0.3 305,139 - +0.2 305,140 + -0.5 305,140 + +0.2 305,140 + +0.4 305,140 + -0.6 305,141 - -0.6 305,142 + +0.1 305,142 + +0.2 305,142 + -0.6 305,380 + MMP_RS01645 0.37 -0.4 305,542 + MMP_RS01645 0.60 -0.1 305,625 - MMP_RS01645 0.72 +0.3 305,630 - MMP_RS01645 0.73 +0.1 305,773 - -0.4 305,792 - +0.2 305,792 - +0.3 305,884 + -0.2 306,118 - MMP_RS01650 0.69 -1.4 306,169 + -2.7 306,174 - -0.0 306,210 - +0.7 306,323 - MMP_RS01655 0.37 +0.7 306,365 - MMP_RS01655 0.50 -0.6 306,499 + MMP_RS01655 0.88 +0.3 306,521 + +0.9 306,545 - +0.4 306,558 - +0.5 306,590 + +0.4 306,603 - +0.5 306,617 - -0.3 306,622 - +0.3 306,636 - +0.4 306,636 - +0.0 306,641 - +0.7 306,647 + +0.7 306,663 + -0.6 306,663 + -0.4 306,744 - MMP_RS01660 0.14 +0.3 306,745 + MMP_RS01660 0.14 +0.3 306,756 + MMP_RS01660 0.16 -0.8 306,999 + MMP_RS01660 0.57 +0.6
Or see this region's nucleotide sequence