Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01480 and MMP_RS01485 are separated by 251 nucleotides MMP_RS01485 and MMP_RS01490 are separated by 24 nucleotides
MMP_RS01480: MMP_RS01480 - hydrogenase expression/formation protein HypE, at 273,244 to 274,248
_RS01480
MMP_RS01485: MMP_RS01485 - right-handed parallel beta-helix repeat-containing protein, at 274,500 to 277,178
_RS01485
MMP_RS01490: MMP_RS01490 - tetratricopeptide repeat protein, at 277,203 to 278,237
_RS01490
Position (kb) 274
275
276
277
278 Strain fitness (log2 ratio) -2
-1
0
1 at 273.684 kb on + strand at 273.965 kb on - strand at 274.098 kb on + strand at 274.444 kb on - strand at 274.452 kb on + strand at 274.632 kb on + strand at 274.810 kb on - strand, within MMP_RS01485 at 274.853 kb on + strand, within MMP_RS01485 at 275.316 kb on + strand, within MMP_RS01485 at 275.915 kb on - strand, within MMP_RS01485 at 275.916 kb on + strand, within MMP_RS01485 at 275.920 kb on - strand, within MMP_RS01485 at 276.133 kb on - strand, within MMP_RS01485 at 276.295 kb on - strand, within MMP_RS01485 at 276.432 kb on - strand, within MMP_RS01485 at 276.474 kb on + strand, within MMP_RS01485 at 276.541 kb on - strand, within MMP_RS01485 at 276.561 kb on - strand, within MMP_RS01485 at 276.711 kb on + strand, within MMP_RS01485 at 276.744 kb on + strand, within MMP_RS01485 at 276.779 kb on - strand, within MMP_RS01485 at 276.805 kb on - strand, within MMP_RS01485 at 277.224 kb on + strand at 277.319 kb on + strand, within MMP_RS01490 at 277.540 kb on - strand, within MMP_RS01490 at 277.625 kb on + strand, within MMP_RS01490 at 277.685 kb on - strand, within MMP_RS01490 at 277.685 kb on - strand, within MMP_RS01490 at 277.800 kb on + strand, within MMP_RS01490 at 277.932 kb on - strand, within MMP_RS01490 at 277.950 kb on + strand, within MMP_RS01490
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 273,684 + -1.2 273,965 - -1.9 274,098 + -2.2 274,444 - +0.5 274,452 + +0.9 274,632 + +0.7 274,810 - MMP_RS01485 0.12 -0.3 274,853 + MMP_RS01485 0.13 +0.3 275,316 + MMP_RS01485 0.30 +0.2 275,915 - MMP_RS01485 0.53 -0.2 275,916 + MMP_RS01485 0.53 +0.3 275,920 - MMP_RS01485 0.53 +0.8 276,133 - MMP_RS01485 0.61 +0.1 276,295 - MMP_RS01485 0.67 -1.0 276,432 - MMP_RS01485 0.72 +0.6 276,474 + MMP_RS01485 0.74 +0.2 276,541 - MMP_RS01485 0.76 +0.5 276,561 - MMP_RS01485 0.77 +0.6 276,711 + MMP_RS01485 0.83 +0.3 276,744 + MMP_RS01485 0.84 -0.0 276,779 - MMP_RS01485 0.85 +0.7 276,805 - MMP_RS01485 0.86 +0.3 277,224 + +0.8 277,319 + MMP_RS01490 0.11 +0.2 277,540 - MMP_RS01490 0.33 +0.5 277,625 + MMP_RS01490 0.41 -0.3 277,685 - MMP_RS01490 0.47 -0.4 277,685 - MMP_RS01490 0.47 +0.3 277,800 + MMP_RS01490 0.58 -0.9 277,932 - MMP_RS01490 0.70 +0.2 277,950 + MMP_RS01490 0.72 +0.1
Or see this region's nucleotide sequence