Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01105 and MMP_RS01110 are separated by 16 nucleotides MMP_RS01110 and MMP_RS01115 are separated by 26 nucleotides MMP_RS01115 and MMP_RS01120 are separated by 789 nucleotides
MMP_RS01105: MMP_RS01105 - hypothetical protein, at 206,848 to 207,624
_RS01105
MMP_RS01110: MMP_RS01110 - FmdE family protein, at 207,641 to 208,225
_RS01110
MMP_RS01115: MMP_RS01115 - molybdopterin molybdotransferase MoeA, at 208,252 to 209,379
_RS01115
MMP_RS01120: MMP_RS01120 - permease, at 210,169 to 211,125
_RS01120
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1 at 207.365 kb on - strand, within MMP_RS01105 at 207.383 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.390 kb on - strand, within MMP_RS01105 at 207.652 kb on + strand at 207.817 kb on - strand, within MMP_RS01110 at 208.044 kb on - strand, within MMP_RS01110 at 208.045 kb on + strand, within MMP_RS01110 at 208.165 kb on - strand, within MMP_RS01110 at 208.278 kb on - strand at 208.299 kb on - strand at 208.648 kb on + strand, within MMP_RS01115 at 208.648 kb on + strand, within MMP_RS01115 at 208.929 kb on - strand, within MMP_RS01115 at 208.973 kb on + strand, within MMP_RS01115 at 208.988 kb on - strand, within MMP_RS01115 at 209.078 kb on - strand, within MMP_RS01115 at 209.079 kb on + strand, within MMP_RS01115 at 209.079 kb on + strand, within MMP_RS01115 at 209.111 kb on - strand, within MMP_RS01115 at 209.293 kb on + strand at 209.377 kb on - strand at 209.380 kb on - strand at 209.384 kb on + strand at 209.386 kb on - strand at 209.388 kb on - strand at 209.388 kb on - strand at 209.388 kb on - strand at 209.388 kb on - strand at 209.389 kb on + strand at 209.393 kb on + strand at 209.393 kb on + strand at 209.393 kb on + strand at 209.519 kb on - strand at 209.549 kb on - strand at 209.549 kb on - strand at 209.550 kb on + strand at 209.555 kb on - strand at 209.560 kb on + strand at 209.573 kb on - strand at 209.643 kb on - strand at 209.644 kb on + strand at 209.645 kb on - strand at 209.645 kb on - strand at 209.646 kb on + strand at 209.646 kb on + strand at 209.646 kb on + strand at 209.656 kb on - strand at 209.656 kb on - strand at 209.658 kb on - strand at 209.659 kb on + strand at 209.670 kb on - strand at 209.678 kb on - strand at 209.678 kb on - strand at 209.688 kb on + strand at 209.689 kb on - strand at 209.689 kb on - strand at 209.689 kb on - strand at 209.690 kb on + strand at 209.691 kb on - strand at 209.691 kb on - strand at 209.691 kb on - strand at 209.692 kb on + strand at 209.692 kb on + strand at 209.705 kb on + strand at 209.746 kb on + strand at 209.773 kb on - strand at 209.776 kb on - strand at 209.791 kb on + strand at 209.801 kb on - strand at 209.820 kb on + strand at 209.840 kb on - strand at 209.841 kb on + strand at 209.947 kb on - strand at 209.947 kb on - strand at 209.955 kb on - strand at 209.959 kb on - strand at 209.959 kb on - strand at 209.959 kb on - strand at 210.003 kb on + strand at 210.010 kb on - strand at 210.010 kb on - strand at 210.010 kb on - strand at 210.010 kb on - strand at 210.011 kb on + strand at 210.012 kb on - strand at 210.012 kb on - strand at 210.012 kb on - strand at 210.013 kb on + strand at 210.013 kb on + strand at 210.013 kb on + strand at 210.013 kb on + strand at 210.013 kb on + strand at 210.014 kb on - strand at 210.055 kb on - strand at 210.055 kb on - strand at 210.055 kb on - strand at 210.055 kb on - strand at 210.057 kb on - strand at 210.057 kb on - strand at 210.062 kb on - strand at 210.062 kb on - strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.066 kb on - strand at 210.067 kb on + strand at 210.067 kb on + strand at 210.123 kb on - strand at 210.188 kb on + strand at 210.201 kb on - strand at 210.202 kb on + strand at 210.290 kb on - strand, within MMP_RS01120 at 210.309 kb on + strand, within MMP_RS01120 at 210.309 kb on + strand, within MMP_RS01120 at 210.309 kb on + strand, within MMP_RS01120 at 210.322 kb on - strand, within MMP_RS01120 at 210.327 kb on - strand, within MMP_RS01120 at 210.328 kb on + strand, within MMP_RS01120 at 210.334 kb on - strand, within MMP_RS01120
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 207,365 - MMP_RS01105 0.67 +0.3 207,383 - MMP_RS01105 0.69 -0.7 207,390 - MMP_RS01105 0.70 -0.5 207,390 - MMP_RS01105 0.70 +0.1 207,652 + +0.2 207,817 - MMP_RS01110 0.30 -0.3 208,044 - MMP_RS01110 0.69 +0.3 208,045 + MMP_RS01110 0.69 +0.7 208,165 - MMP_RS01110 0.90 -0.6 208,278 - +0.0 208,299 - -0.0 208,648 + MMP_RS01115 0.35 -0.1 208,648 + MMP_RS01115 0.35 +0.3 208,929 - MMP_RS01115 0.60 +0.0 208,973 + MMP_RS01115 0.64 +0.9 208,988 - MMP_RS01115 0.65 -0.1 209,078 - MMP_RS01115 0.73 +0.3 209,079 + MMP_RS01115 0.73 +0.3 209,079 + MMP_RS01115 0.73 +0.1 209,111 - MMP_RS01115 0.76 +0.4 209,293 + +0.4 209,377 - -0.1 209,380 - -0.5 209,384 + +0.2 209,386 - +0.1 209,388 - -0.4 209,388 - -0.9 209,388 - +0.4 209,388 - +0.6 209,389 + -0.2 209,393 + -0.4 209,393 + +0.7 209,393 + +0.2 209,519 - +0.5 209,549 - -0.1 209,549 - +0.4 209,550 + -0.3 209,555 - +0.1 209,560 + +0.1 209,573 - +1.0 209,643 - +0.1 209,644 + -0.1 209,645 - -0.2 209,645 - -0.4 209,646 + -1.4 209,646 + +0.2 209,646 + +0.9 209,656 - -0.9 209,656 - +0.2 209,658 - -0.3 209,659 + +0.4 209,670 - -0.3 209,678 - +0.4 209,678 - +0.6 209,688 + +0.5 209,689 - -0.3 209,689 - +0.4 209,689 - -0.1 209,690 + +0.4 209,691 - +0.0 209,691 - +0.1 209,691 - +0.6 209,692 + +0.1 209,692 + +0.4 209,705 + +0.6 209,746 + +0.4 209,773 - -0.0 209,776 - -0.3 209,791 + +0.3 209,801 - +0.3 209,820 + +1.2 209,840 - +0.4 209,841 + +0.5 209,947 - +0.5 209,947 - +0.1 209,955 - -0.4 209,959 - +0.5 209,959 - -0.4 209,959 - +0.2 210,003 + -0.3 210,010 - -0.2 210,010 - +0.6 210,010 - +0.5 210,010 - +0.5 210,011 + +0.1 210,012 - -0.1 210,012 - +1.0 210,012 - +0.8 210,013 + +0.6 210,013 + +0.8 210,013 + +0.4 210,013 + +0.7 210,013 + +0.4 210,014 - -0.1 210,055 - -0.0 210,055 - +0.3 210,055 - -0.3 210,055 - -0.4 210,057 - +0.3 210,057 - +0.7 210,062 - +0.7 210,062 - +0.1 210,066 - -0.1 210,066 - -0.1 210,066 - +0.1 210,067 + +0.2 210,067 + -1.0 210,123 - +0.1 210,188 + +0.1 210,201 - +0.4 210,202 + +0.6 210,290 - MMP_RS01120 0.13 +0.2 210,309 + MMP_RS01120 0.15 +0.5 210,309 + MMP_RS01120 0.15 +0.5 210,309 + MMP_RS01120 0.15 +0.2 210,322 - MMP_RS01120 0.16 +0.3 210,327 - MMP_RS01120 0.17 +0.3 210,328 + MMP_RS01120 0.17 +0.1 210,334 - MMP_RS01120 0.17 -0.0
Or see this region's nucleotide sequence