Experiment: Formate with hypochlorite 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00530 and MMP_RS00535 are separated by 21 nucleotides MMP_RS00535 and MMP_RS00540 are separated by 2 nucleotides
MMP_RS00530: MMP_RS00530 - tRNA pseudouridine(54/55) synthase Pus10, at 103,274 to 104,686
_RS00530
MMP_RS00535: MMP_RS00535 - TIGR00375 family protein, at 104,708 to 105,892
_RS00535
MMP_RS00540: MMP_RS00540 - PLP-dependent aminotransferase family protein, at 105,895 to 107,082
_RS00540
Position (kb) 104
105
106 Strain fitness (log2 ratio) -1
0
1 at 103.766 kb on - strand, within MMP_RS00530 at 103.905 kb on - strand, within MMP_RS00530 at 103.906 kb on + strand, within MMP_RS00530 at 103.906 kb on + strand, within MMP_RS00530 at 104.001 kb on - strand, within MMP_RS00530 at 104.006 kb on + strand, within MMP_RS00530 at 104.006 kb on + strand, within MMP_RS00530 at 104.038 kb on - strand, within MMP_RS00530 at 104.446 kb on + strand, within MMP_RS00530 at 104.608 kb on - strand at 104.673 kb on - strand at 104.674 kb on + strand at 104.674 kb on + strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.678 kb on - strand at 104.679 kb on + strand at 104.679 kb on + strand at 104.679 kb on + strand at 104.687 kb on + strand at 104.687 kb on + strand at 104.688 kb on - strand at 104.716 kb on + strand at 104.727 kb on - strand at 104.727 kb on - strand at 104.727 kb on - strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.728 kb on + strand at 104.731 kb on - strand at 104.732 kb on + strand at 104.744 kb on - strand at 104.750 kb on + strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.761 kb on - strand at 104.762 kb on + strand at 104.762 kb on + strand at 104.762 kb on + strand at 104.765 kb on - strand at 104.765 kb on - strand at 104.766 kb on + strand at 104.766 kb on + strand at 104.767 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.782 kb on - strand at 104.783 kb on + strand at 104.793 kb on + strand at 104.947 kb on - strand, within MMP_RS00535 at 104.947 kb on - strand, within MMP_RS00535 at 105.791 kb on - strand at 106.134 kb on - strand, within MMP_RS00540 at 106.192 kb on + strand, within MMP_RS00540 at 106.193 kb on - strand, within MMP_RS00540 at 106.196 kb on + strand, within MMP_RS00540 at 106.300 kb on - strand, within MMP_RS00540 at 106.300 kb on - strand, within MMP_RS00540 at 106.302 kb on - strand, within MMP_RS00540 at 106.706 kb on - strand, within MMP_RS00540 at 106.706 kb on - strand, within MMP_RS00540 at 106.724 kb on + strand, within MMP_RS00540
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM remove 103,766 - MMP_RS00530 0.35 -0.5 103,905 - MMP_RS00530 0.45 +0.8 103,906 + MMP_RS00530 0.45 -0.2 103,906 + MMP_RS00530 0.45 -0.8 104,001 - MMP_RS00530 0.51 +0.4 104,006 + MMP_RS00530 0.52 +0.4 104,006 + MMP_RS00530 0.52 -0.8 104,038 - MMP_RS00530 0.54 -0.8 104,446 + MMP_RS00530 0.83 +0.2 104,608 - -0.7 104,673 - +0.2 104,674 + -0.1 104,674 + -0.9 104,678 - +0.0 104,678 - -0.1 104,678 - -0.2 104,678 - -1.3 104,679 + -0.5 104,679 + -0.3 104,679 + +0.5 104,687 + -0.0 104,687 + -0.7 104,688 - -0.4 104,716 + +0.3 104,727 - +0.5 104,727 - +0.5 104,727 - -1.3 104,728 + +0.2 104,728 + +0.7 104,728 + -1.0 104,731 - -0.1 104,732 + +0.8 104,744 - +0.1 104,750 + -0.1 104,761 - +0.3 104,761 - +0.7 104,761 - -0.2 104,761 - +0.4 104,761 - -0.3 104,762 + +0.3 104,762 + -0.2 104,762 + -0.3 104,765 - +0.8 104,765 - +0.2 104,766 + +0.1 104,766 + -0.3 104,767 - -0.6 104,782 - -0.6 104,782 - +0.0 104,782 - -0.4 104,782 - +0.3 104,782 - +0.1 104,783 + -0.3 104,793 + +0.2 104,947 - MMP_RS00535 0.20 +0.7 104,947 - MMP_RS00535 0.20 -0.4 105,791 - -0.3 106,134 - MMP_RS00540 0.20 +0.8 106,192 + MMP_RS00540 0.25 -0.4 106,193 - MMP_RS00540 0.25 +0.1 106,196 + MMP_RS00540 0.25 +0.2 106,300 - MMP_RS00540 0.34 +0.6 106,300 - MMP_RS00540 0.34 +0.0 106,302 - MMP_RS00540 0.34 -0.9 106,706 - MMP_RS00540 0.68 +0.3 106,706 - MMP_RS00540 0.68 +0.3 106,724 + MMP_RS00540 0.70 -0.1
Or see this region's nucleotide sequence