Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00195

Experiment: Formate with hypochlorite 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00190 and MMP_RS00195 are separated by 64 nucleotidesMMP_RS00195 and MMP_RS00200 are separated by 223 nucleotides MMP_RS00190: MMP_RS00190 - cobyrinic acid a c-diamide synthase, at 43,261 to 44,712 _RS00190 MMP_RS00195: MMP_RS00195 - DUF4013 domain-containing protein, at 44,777 to 45,415 _RS00195 MMP_RS00200: MMP_RS00200 - minichromosome maintenance protein MCM, at 45,639 to 47,657 _RS00200 Position (kb) 44 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 43.969 kb on + strandat 44.097 kb on - strandat 44.112 kb on + strandat 44.130 kb on - strandat 44.131 kb on + strandat 44.156 kb on - strandat 44.157 kb on + strandat 44.227 kb on + strandat 44.230 kb on + strandat 44.231 kb on - strandat 44.231 kb on - strandat 44.232 kb on + strandat 44.268 kb on - strandat 44.268 kb on - strandat 44.318 kb on - strandat 44.321 kb on + strandat 44.323 kb on + strandat 44.491 kb on + strandat 44.535 kb on - strandat 44.535 kb on - strandat 44.536 kb on + strandat 44.546 kb on - strandat 44.613 kb on + strandat 44.613 kb on + strandat 44.656 kb on + strandat 44.700 kb on + strandat 44.703 kb on - strandat 44.743 kb on - strandat 44.811 kb on - strandat 44.813 kb on - strandat 44.813 kb on - strandat 44.814 kb on + strandat 44.841 kb on + strand, within MMP_RS00195at 44.909 kb on - strand, within MMP_RS00195at 44.910 kb on + strand, within MMP_RS00195at 44.916 kb on + strand, within MMP_RS00195at 44.919 kb on - strand, within MMP_RS00195at 44.919 kb on - strand, within MMP_RS00195at 44.920 kb on + strand, within MMP_RS00195at 44.924 kb on - strand, within MMP_RS00195at 44.924 kb on - strand, within MMP_RS00195at 44.924 kb on - strand, within MMP_RS00195at 44.927 kb on - strand, within MMP_RS00195at 44.927 kb on - strand, within MMP_RS00195at 44.927 kb on - strand, within MMP_RS00195at 44.928 kb on + strand, within MMP_RS00195at 44.929 kb on - strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.930 kb on + strand, within MMP_RS00195at 44.932 kb on + strand, within MMP_RS00195at 44.945 kb on + strand, within MMP_RS00195at 44.978 kb on + strand, within MMP_RS00195at 45.010 kb on + strand, within MMP_RS00195at 45.025 kb on - strand, within MMP_RS00195at 45.045 kb on + strand, within MMP_RS00195at 45.060 kb on + strand, within MMP_RS00195at 45.063 kb on + strand, within MMP_RS00195at 45.066 kb on + strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.076 kb on - strand, within MMP_RS00195at 45.080 kb on + strand, within MMP_RS00195at 45.080 kb on + strand, within MMP_RS00195at 45.124 kb on - strand, within MMP_RS00195at 45.155 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.163 kb on - strand, within MMP_RS00195at 45.164 kb on + strand, within MMP_RS00195at 45.164 kb on + strand, within MMP_RS00195at 45.167 kb on - strand, within MMP_RS00195at 45.168 kb on + strand, within MMP_RS00195at 45.184 kb on - strand, within MMP_RS00195at 45.184 kb on - strand, within MMP_RS00195at 45.184 kb on - strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.185 kb on + strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.186 kb on - strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.187 kb on + strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.188 kb on - strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.189 kb on + strand, within MMP_RS00195at 45.191 kb on - strand, within MMP_RS00195at 45.191 kb on - strand, within MMP_RS00195at 45.192 kb on + strand, within MMP_RS00195at 45.192 kb on + strand, within MMP_RS00195at 45.193 kb on - strand, within MMP_RS00195at 45.194 kb on + strand, within MMP_RS00195at 45.194 kb on + strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.195 kb on - strand, within MMP_RS00195at 45.196 kb on + strand, within MMP_RS00195at 45.196 kb on + strand, within MMP_RS00195at 45.201 kb on + strand, within MMP_RS00195at 45.221 kb on - strand, within MMP_RS00195at 45.276 kb on + strand, within MMP_RS00195at 45.394 kb on - strandat 45.428 kb on - strandat 45.434 kb on + strandat 45.457 kb on - strandat 45.458 kb on + strandat 45.536 kb on + strandat 45.569 kb on - strandat 45.569 kb on - strandat 45.586 kb on + strandat 45.588 kb on - strandat 45.589 kb on + strandat 45.590 kb on - strandat 45.591 kb on + strandat 45.591 kb on + strandat 45.593 kb on + strandat 45.593 kb on + strandat 45.593 kb on + strandat 45.607 kb on + strandat 45.607 kb on + strandat 45.607 kb on + strandat 45.607 kb on + strandat 45.609 kb on + strandat 45.746 kb on + strandat 46.237 kb on + strandat 46.242 kb on + strandat 46.353 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with hypochlorite 5 mM
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43,969 + -0.7
44,097 - -0.6
44,112 + -1.7
44,130 - -1.3
44,131 + -2.4
44,156 - -1.6
44,157 + -1.5
44,227 + -1.2
44,230 + -0.5
44,231 - -0.5
44,231 - -1.3
44,232 + -1.5
44,268 - -2.4
44,268 - -0.8
44,318 - -1.2
44,321 + -1.6
44,323 + -3.8
44,491 + -2.2
44,535 - -0.4
44,535 - +0.0
44,536 + -0.3
44,546 - -1.2
44,613 + -1.6
44,613 + -1.3
44,656 + -1.5
44,700 + +0.2
44,703 - -0.3
44,743 - -0.5
44,811 - +0.2
44,813 - -0.7
44,813 - +0.4
44,814 + +0.9
44,841 + MMP_RS00195 0.10 -0.1
44,909 - MMP_RS00195 0.21 +0.3
44,910 + MMP_RS00195 0.21 +0.8
44,916 + MMP_RS00195 0.22 +0.4
44,919 - MMP_RS00195 0.22 -0.1
44,919 - MMP_RS00195 0.22 +0.6
44,920 + MMP_RS00195 0.22 +0.8
44,924 - MMP_RS00195 0.23 +0.1
44,924 - MMP_RS00195 0.23 +0.4
44,924 - MMP_RS00195 0.23 +0.3
44,927 - MMP_RS00195 0.23 +0.4
44,927 - MMP_RS00195 0.23 -0.2
44,927 - MMP_RS00195 0.23 -0.1
44,928 + MMP_RS00195 0.24 +0.1
44,929 - MMP_RS00195 0.24 +1.0
44,930 + MMP_RS00195 0.24 -0.0
44,930 + MMP_RS00195 0.24 +0.2
44,930 + MMP_RS00195 0.24 +0.4
44,930 + MMP_RS00195 0.24 +0.2
44,932 + MMP_RS00195 0.24 -0.5
44,945 + MMP_RS00195 0.26 +0.2
44,978 + MMP_RS00195 0.31 -0.9
45,010 + MMP_RS00195 0.36 +0.7
45,025 - MMP_RS00195 0.39 +0.3
45,045 + MMP_RS00195 0.42 -0.1
45,060 + MMP_RS00195 0.44 +0.5
45,063 + MMP_RS00195 0.45 +0.2
45,066 + MMP_RS00195 0.45 -0.4
45,076 - MMP_RS00195 0.47 -0.6
45,076 - MMP_RS00195 0.47 +0.3
45,076 - MMP_RS00195 0.47 +0.6
45,076 - MMP_RS00195 0.47 -0.3
45,080 + MMP_RS00195 0.47 +0.8
45,080 + MMP_RS00195 0.47 -0.3
45,124 - MMP_RS00195 0.54 +0.1
45,155 - MMP_RS00195 0.59 +0.3
45,163 - MMP_RS00195 0.60 +0.4
45,163 - MMP_RS00195 0.60 +0.3
45,163 - MMP_RS00195 0.60 +0.3
45,163 - MMP_RS00195 0.60 +0.3
45,164 + MMP_RS00195 0.61 +0.4
45,164 + MMP_RS00195 0.61 +0.9
45,167 - MMP_RS00195 0.61 +0.1
45,168 + MMP_RS00195 0.61 +0.7
45,184 - MMP_RS00195 0.64 +0.1
45,184 - MMP_RS00195 0.64 +0.5
45,184 - MMP_RS00195 0.64 +0.5
45,185 + MMP_RS00195 0.64 -0.2
45,185 + MMP_RS00195 0.64 -0.2
45,185 + MMP_RS00195 0.64 -0.1
45,185 + MMP_RS00195 0.64 +0.8
45,185 + MMP_RS00195 0.64 -0.1
45,185 + MMP_RS00195 0.64 -0.3
45,185 + MMP_RS00195 0.64 +0.1
45,185 + MMP_RS00195 0.64 +0.6
45,185 + MMP_RS00195 0.64 -0.4
45,185 + MMP_RS00195 0.64 -0.2
45,185 + MMP_RS00195 0.64 +0.3
45,186 - MMP_RS00195 0.64 +0.4
45,186 - MMP_RS00195 0.64 +0.1
45,186 - MMP_RS00195 0.64 -0.2
45,186 - MMP_RS00195 0.64 -0.9
45,186 - MMP_RS00195 0.64 +0.9
45,186 - MMP_RS00195 0.64 +0.0
45,186 - MMP_RS00195 0.64 +0.6
45,187 + MMP_RS00195 0.64 -0.0
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.4
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.2
45,187 + MMP_RS00195 0.64 +0.1
45,187 + MMP_RS00195 0.64 +1.0
45,187 + MMP_RS00195 0.64 +0.1
45,187 + MMP_RS00195 0.64 -0.2
45,187 + MMP_RS00195 0.64 -0.3
45,187 + MMP_RS00195 0.64 +0.2
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 -0.1
45,187 + MMP_RS00195 0.64 +0.5
45,187 + MMP_RS00195 0.64 -0.2
45,187 + MMP_RS00195 0.64 +0.3
45,187 + MMP_RS00195 0.64 +0.2
45,187 + MMP_RS00195 0.64 +0.4
45,187 + MMP_RS00195 0.64 +0.8
45,188 - MMP_RS00195 0.64 +0.4
45,188 - MMP_RS00195 0.64 +0.5
45,188 - MMP_RS00195 0.64 +0.0
45,188 - MMP_RS00195 0.64 +0.3
45,189 + MMP_RS00195 0.64 +0.6
45,189 + MMP_RS00195 0.64 +0.1
45,189 + MMP_RS00195 0.64 +0.4
45,189 + MMP_RS00195 0.64 +0.5
45,189 + MMP_RS00195 0.64 -0.0
45,191 - MMP_RS00195 0.65 +0.0
45,191 - MMP_RS00195 0.65 +0.5
45,192 + MMP_RS00195 0.65 +0.3
45,192 + MMP_RS00195 0.65 -0.2
45,193 - MMP_RS00195 0.65 +0.5
45,194 + MMP_RS00195 0.65 +0.5
45,194 + MMP_RS00195 0.65 +0.4
45,195 - MMP_RS00195 0.65 +0.3
45,195 - MMP_RS00195 0.65 -0.5
45,195 - MMP_RS00195 0.65 -0.0
45,195 - MMP_RS00195 0.65 -0.2
45,196 + MMP_RS00195 0.66 -0.5
45,196 + MMP_RS00195 0.66 -0.3
45,201 + MMP_RS00195 0.66 +0.8
45,221 - MMP_RS00195 0.69 +0.3
45,276 + MMP_RS00195 0.78 -0.1
45,394 - -0.2
45,428 - +0.4
45,434 + -0.5
45,457 - +0.2
45,458 + +0.6
45,536 + +0.3
45,569 - -0.1
45,569 - +0.6
45,586 + +0.5
45,588 - +1.4
45,589 + +0.4
45,590 - -1.8
45,591 + +0.5
45,591 + +0.4
45,593 + +0.5
45,593 + -0.1
45,593 + -0.4
45,607 + +0.6
45,607 + +0.8
45,607 + +1.1
45,607 + -0.5
45,609 + +0.2
45,746 + -2.8
46,237 + -0.5
46,242 + -0.0
46,353 + +0.5

Or see this region's nucleotide sequence