Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19345 and IAI47_19350 are separated by 49 nucleotides IAI47_19350 and IAI47_19355 are separated by 276 nucleotides
IAI47_19345: IAI47_19345 - hypothetical protein, at 93,785 to 95,242
_19345
IAI47_19350: IAI47_19350 - DUF305 domain-containing protein, at 95,292 to 95,720
_19350
IAI47_19355: IAI47_19355 - response regulator, at 95,997 to 96,737
_19355
Position (kb) 95
96 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 94.302 kb on + strand, within IAI47_19345 at 94.302 kb on + strand, within IAI47_19345 at 94.303 kb on - strand, within IAI47_19345 at 94.303 kb on - strand, within IAI47_19345 at 94.313 kb on + strand, within IAI47_19345 at 94.392 kb on + strand, within IAI47_19345 at 94.392 kb on + strand, within IAI47_19345 at 94.393 kb on - strand, within IAI47_19345 at 94.400 kb on + strand, within IAI47_19345 at 94.401 kb on - strand, within IAI47_19345 at 94.401 kb on - strand, within IAI47_19345 at 94.421 kb on - strand, within IAI47_19345 at 94.422 kb on - strand, within IAI47_19345 at 94.428 kb on + strand, within IAI47_19345 at 94.428 kb on + strand, within IAI47_19345 at 94.429 kb on - strand, within IAI47_19345 at 94.429 kb on - strand, within IAI47_19345 at 94.429 kb on - strand, within IAI47_19345 at 94.472 kb on - strand, within IAI47_19345 at 94.474 kb on + strand, within IAI47_19345 at 94.474 kb on + strand, within IAI47_19345 at 94.475 kb on - strand, within IAI47_19345 at 94.540 kb on + strand, within IAI47_19345 at 94.540 kb on + strand, within IAI47_19345 at 94.541 kb on - strand, within IAI47_19345 at 94.592 kb on + strand, within IAI47_19345 at 94.593 kb on - strand, within IAI47_19345 at 94.593 kb on - strand, within IAI47_19345 at 94.594 kb on + strand, within IAI47_19345 at 94.595 kb on - strand, within IAI47_19345 at 94.595 kb on - strand, within IAI47_19345 at 94.595 kb on - strand, within IAI47_19345 at 94.621 kb on + strand, within IAI47_19345 at 94.622 kb on - strand, within IAI47_19345 at 94.622 kb on - strand, within IAI47_19345 at 94.622 kb on - strand, within IAI47_19345 at 94.640 kb on - strand, within IAI47_19345 at 94.692 kb on + strand, within IAI47_19345 at 94.693 kb on - strand, within IAI47_19345 at 94.699 kb on - strand, within IAI47_19345 at 94.699 kb on - strand, within IAI47_19345 at 94.699 kb on - strand, within IAI47_19345 at 94.747 kb on + strand, within IAI47_19345 at 94.751 kb on - strand, within IAI47_19345 at 94.792 kb on + strand, within IAI47_19345 at 94.792 kb on + strand, within IAI47_19345 at 94.810 kb on - strand, within IAI47_19345 at 94.840 kb on + strand, within IAI47_19345 at 94.840 kb on + strand, within IAI47_19345 at 94.841 kb on - strand, within IAI47_19345 at 94.841 kb on - strand, within IAI47_19345 at 94.841 kb on - strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.872 kb on + strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.873 kb on - strand, within IAI47_19345 at 94.973 kb on + strand, within IAI47_19345 at 94.973 kb on + strand, within IAI47_19345 at 94.973 kb on + strand, within IAI47_19345 at 94.982 kb on + strand, within IAI47_19345 at 94.982 kb on + strand, within IAI47_19345 at 94.982 kb on + strand, within IAI47_19345 at 94.982 kb on + strand, within IAI47_19345 at 94.982 kb on + strand, within IAI47_19345 at 94.982 kb on + strand, within IAI47_19345 at 94.983 kb on - strand, within IAI47_19345 at 94.983 kb on - strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 94.999 kb on + strand, within IAI47_19345 at 95.000 kb on - strand, within IAI47_19345 at 95.000 kb on - strand, within IAI47_19345 at 95.000 kb on - strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.001 kb on + strand, within IAI47_19345 at 95.002 kb on - strand, within IAI47_19345 at 95.002 kb on - strand, within IAI47_19345 at 95.011 kb on + strand, within IAI47_19345 at 95.011 kb on + strand, within IAI47_19345 at 95.011 kb on + strand, within IAI47_19345 at 95.012 kb on - strand, within IAI47_19345 at 95.012 kb on - strand, within IAI47_19345 at 95.012 kb on - strand, within IAI47_19345 at 95.041 kb on + strand, within IAI47_19345 at 95.041 kb on + strand, within IAI47_19345 at 95.042 kb on - strand, within IAI47_19345 at 95.042 kb on - strand, within IAI47_19345 at 95.059 kb on + strand, within IAI47_19345 at 95.059 kb on + strand, within IAI47_19345 at 95.059 kb on + strand, within IAI47_19345 at 95.160 kb on + strand at 95.160 kb on + strand at 95.160 kb on + strand at 95.161 kb on - strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.225 kb on + strand at 95.226 kb on - strand at 95.258 kb on - strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.293 kb on + strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.294 kb on - strand at 95.370 kb on - strand, within IAI47_19350 at 95.370 kb on - strand, within IAI47_19350 at 95.383 kb on + strand, within IAI47_19350 at 95.384 kb on - strand, within IAI47_19350 at 95.384 kb on - strand, within IAI47_19350 at 95.384 kb on - strand, within IAI47_19350 at 95.432 kb on + strand, within IAI47_19350 at 95.433 kb on - strand, within IAI47_19350 at 95.481 kb on - strand, within IAI47_19350 at 95.544 kb on - strand, within IAI47_19350 at 95.552 kb on + strand, within IAI47_19350 at 95.579 kb on + strand, within IAI47_19350 at 95.579 kb on + strand, within IAI47_19350 at 95.579 kb on + strand, within IAI47_19350 at 95.580 kb on - strand, within IAI47_19350 at 95.580 kb on - strand, within IAI47_19350 at 95.684 kb on + strand at 95.684 kb on + strand at 95.684 kb on + strand at 95.685 kb on - strand at 95.685 kb on - strand at 95.685 kb on - strand at 95.687 kb on + strand at 95.688 kb on - strand at 95.688 kb on - strand at 95.688 kb on - strand at 95.711 kb on + strand at 95.712 kb on - strand at 95.720 kb on + strand at 95.720 kb on + strand at 95.720 kb on + strand at 95.720 kb on + strand at 95.721 kb on - strand at 95.721 kb on - strand at 95.721 kb on - strand at 95.732 kb on + strand at 95.770 kb on + strand at 95.770 kb on + strand at 95.770 kb on + strand at 95.772 kb on + strand at 95.772 kb on + strand at 95.773 kb on - strand at 95.773 kb on - strand at 95.794 kb on + strand at 95.795 kb on - strand at 95.826 kb on + strand at 95.827 kb on - strand at 95.830 kb on + strand at 95.830 kb on + strand at 95.830 kb on + strand at 95.907 kb on + strand at 95.907 kb on + strand at 95.908 kb on - strand at 95.908 kb on - strand at 95.908 kb on - strand at 95.908 kb on - strand at 95.918 kb on - strand at 95.934 kb on + strand at 95.940 kb on + strand at 95.940 kb on + strand at 95.940 kb on + strand at 95.940 kb on + strand at 95.941 kb on - strand at 95.941 kb on - strand at 95.942 kb on + strand at 95.942 kb on + strand at 95.942 kb on + strand at 95.942 kb on + strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.943 kb on - strand at 95.952 kb on - strand at 95.985 kb on - strand at 95.992 kb on - strand at 96.063 kb on + strand at 96.120 kb on - strand, within IAI47_19355 at 96.131 kb on + strand, within IAI47_19355 at 96.188 kb on + strand, within IAI47_19355 at 96.188 kb on + strand, within IAI47_19355 at 96.189 kb on - strand, within IAI47_19355 at 96.221 kb on + strand, within IAI47_19355 at 96.222 kb on - strand, within IAI47_19355 at 96.222 kb on - strand, within IAI47_19355 at 96.222 kb on - strand, within IAI47_19355 at 96.245 kb on - strand, within IAI47_19355 at 96.303 kb on + strand, within IAI47_19355 at 96.304 kb on - strand, within IAI47_19355 at 96.347 kb on - strand, within IAI47_19355 at 96.358 kb on + strand, within IAI47_19355 at 96.358 kb on + strand, within IAI47_19355 at 96.366 kb on - strand, within IAI47_19355 at 96.392 kb on + strand, within IAI47_19355 at 96.501 kb on + strand, within IAI47_19355 at 96.517 kb on + strand, within IAI47_19355 at 96.518 kb on - strand, within IAI47_19355 at 96.640 kb on + strand, within IAI47_19355 at 96.666 kb on + strand at 96.669 kb on - strand at 96.693 kb on + strand at 96.693 kb on + strand at 96.693 kb on + strand at 96.693 kb on + strand at 96.694 kb on - strand at 96.694 kb on - strand at 96.697 kb on + strand at 96.697 kb on + strand at 96.697 kb on + strand at 96.697 kb on + strand at 96.698 kb on - strand at 96.698 kb on - strand at 96.698 kb on - strand at 96.698 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50 remove 94,302 + IAI47_19345 0.35 +0.6 94,302 + IAI47_19345 0.35 -2.0 94,303 - IAI47_19345 0.36 +2.3 94,303 - IAI47_19345 0.36 -0.6 94,313 + IAI47_19345 0.36 -0.8 94,392 + IAI47_19345 0.42 +0.9 94,392 + IAI47_19345 0.42 -0.0 94,393 - IAI47_19345 0.42 +0.7 94,400 + IAI47_19345 0.42 -2.0 94,401 - IAI47_19345 0.42 +2.7 94,401 - IAI47_19345 0.42 -1.0 94,421 - IAI47_19345 0.44 +0.3 94,422 - IAI47_19345 0.44 +1.0 94,428 + IAI47_19345 0.44 -0.4 94,428 + IAI47_19345 0.44 -0.7 94,429 - IAI47_19345 0.44 -2.0 94,429 - IAI47_19345 0.44 +0.8 94,429 - IAI47_19345 0.44 -0.3 94,472 - IAI47_19345 0.47 +0.6 94,474 + IAI47_19345 0.47 -1.7 94,474 + IAI47_19345 0.47 -0.3 94,475 - IAI47_19345 0.47 -0.4 94,540 + IAI47_19345 0.52 -2.2 94,540 + IAI47_19345 0.52 +2.1 94,541 - IAI47_19345 0.52 +0.8 94,592 + IAI47_19345 0.55 +2.1 94,593 - IAI47_19345 0.55 -2.6 94,593 - IAI47_19345 0.55 +0.3 94,594 + IAI47_19345 0.55 -1.7 94,595 - IAI47_19345 0.56 +4.0 94,595 - IAI47_19345 0.56 -0.5 94,595 - IAI47_19345 0.56 +1.5 94,621 + IAI47_19345 0.57 -0.5 94,622 - IAI47_19345 0.57 +0.9 94,622 - IAI47_19345 0.57 -3.4 94,622 - IAI47_19345 0.57 -1.1 94,640 - IAI47_19345 0.59 +0.3 94,692 + IAI47_19345 0.62 -1.3 94,693 - IAI47_19345 0.62 +1.7 94,699 - IAI47_19345 0.63 +2.3 94,699 - IAI47_19345 0.63 -0.6 94,699 - IAI47_19345 0.63 -1.0 94,747 + IAI47_19345 0.66 -0.4 94,751 - IAI47_19345 0.66 -0.7 94,792 + IAI47_19345 0.69 -2.6 94,792 + IAI47_19345 0.69 +2.0 94,810 - IAI47_19345 0.70 +0.1 94,840 + IAI47_19345 0.72 +0.3 94,840 + IAI47_19345 0.72 -1.9 94,841 - IAI47_19345 0.72 +0.3 94,841 - IAI47_19345 0.72 -0.3 94,841 - IAI47_19345 0.72 -1.2 94,872 + IAI47_19345 0.75 -0.1 94,872 + IAI47_19345 0.75 -2.2 94,872 + IAI47_19345 0.75 -0.4 94,872 + IAI47_19345 0.75 -1.9 94,872 + IAI47_19345 0.75 -1.0 94,872 + IAI47_19345 0.75 -1.4 94,872 + IAI47_19345 0.75 +2.6 94,873 - IAI47_19345 0.75 -0.7 94,873 - IAI47_19345 0.75 -1.6 94,873 - IAI47_19345 0.75 -0.2 94,873 - IAI47_19345 0.75 +3.1 94,873 - IAI47_19345 0.75 +1.6 94,873 - IAI47_19345 0.75 -0.5 94,873 - IAI47_19345 0.75 -1.4 94,873 - IAI47_19345 0.75 -2.2 94,873 - IAI47_19345 0.75 -0.1 94,873 - IAI47_19345 0.75 -0.3 94,873 - IAI47_19345 0.75 +0.0 94,873 - IAI47_19345 0.75 -0.7 94,873 - IAI47_19345 0.75 +2.1 94,873 - IAI47_19345 0.75 +0.5 94,973 + IAI47_19345 0.81 -0.1 94,973 + IAI47_19345 0.81 -1.0 94,973 + IAI47_19345 0.81 +0.8 94,982 + IAI47_19345 0.82 +0.3 94,982 + IAI47_19345 0.82 -1.2 94,982 + IAI47_19345 0.82 -0.4 94,982 + IAI47_19345 0.82 -2.6 94,982 + IAI47_19345 0.82 -0.9 94,982 + IAI47_19345 0.82 +0.6 94,983 - IAI47_19345 0.82 -2.0 94,983 - IAI47_19345 0.82 -1.5 94,999 + IAI47_19345 0.83 +3.1 94,999 + IAI47_19345 0.83 +0.9 94,999 + IAI47_19345 0.83 +2.0 94,999 + IAI47_19345 0.83 +1.5 94,999 + IAI47_19345 0.83 -0.7 95,000 - IAI47_19345 0.83 +2.7 95,000 - IAI47_19345 0.83 -0.9 95,000 - IAI47_19345 0.83 -1.9 95,001 + IAI47_19345 0.83 -3.0 95,001 + IAI47_19345 0.83 +0.3 95,001 + IAI47_19345 0.83 -2.3 95,001 + IAI47_19345 0.83 -1.7 95,001 + IAI47_19345 0.83 +0.4 95,001 + IAI47_19345 0.83 -0.7 95,002 - IAI47_19345 0.83 +1.9 95,002 - IAI47_19345 0.83 +1.5 95,011 + IAI47_19345 0.84 -0.1 95,011 + IAI47_19345 0.84 -0.3 95,011 + IAI47_19345 0.84 -0.2 95,012 - IAI47_19345 0.84 +0.3 95,012 - IAI47_19345 0.84 -1.3 95,012 - IAI47_19345 0.84 +0.3 95,041 + IAI47_19345 0.86 +0.3 95,041 + IAI47_19345 0.86 -0.7 95,042 - IAI47_19345 0.86 +0.9 95,042 - IAI47_19345 0.86 -1.0 95,059 + IAI47_19345 0.87 -0.3 95,059 + IAI47_19345 0.87 +0.5 95,059 + IAI47_19345 0.87 -0.2 95,160 + -1.7 95,160 + +1.1 95,160 + -1.8 95,161 - +0.0 95,225 + -1.3 95,225 + +0.9 95,225 + +0.5 95,225 + -1.0 95,225 + +2.1 95,225 + -2.2 95,225 + -0.6 95,225 + +0.9 95,226 - -3.6 95,258 - +0.1 95,293 + -1.3 95,293 + -1.5 95,293 + -1.5 95,293 + -1.3 95,294 - -0.0 95,294 - +0.3 95,294 - -0.1 95,294 - +0.4 95,294 - +0.3 95,370 - IAI47_19350 0.18 -1.6 95,370 - IAI47_19350 0.18 -1.5 95,383 + IAI47_19350 0.21 -1.0 95,384 - IAI47_19350 0.21 -3.0 95,384 - IAI47_19350 0.21 -1.9 95,384 - IAI47_19350 0.21 -1.3 95,432 + IAI47_19350 0.33 +1.8 95,433 - IAI47_19350 0.33 -0.4 95,481 - IAI47_19350 0.44 -1.0 95,544 - IAI47_19350 0.59 +2.0 95,552 + IAI47_19350 0.61 +0.3 95,579 + IAI47_19350 0.67 +0.1 95,579 + IAI47_19350 0.67 -1.3 95,579 + IAI47_19350 0.67 +1.3 95,580 - IAI47_19350 0.67 -2.8 95,580 - IAI47_19350 0.67 -3.1 95,684 + +1.3 95,684 + -0.5 95,684 + -2.0 95,685 - -0.3 95,685 - +2.5 95,685 - -1.5 95,687 + -0.8 95,688 - -0.7 95,688 - -0.6 95,688 - +0.6 95,711 + -0.1 95,712 - -2.3 95,720 + +0.6 95,720 + -1.9 95,720 + -1.9 95,720 + -1.1 95,721 - +2.1 95,721 - +0.7 95,721 - +0.6 95,732 + -1.7 95,770 + +0.7 95,770 + -2.5 95,770 + +0.1 95,772 + -1.4 95,772 + +1.8 95,773 - -0.9 95,773 - -3.2 95,794 + -0.9 95,795 - -0.7 95,826 + -0.0 95,827 - -1.0 95,830 + +1.4 95,830 + +1.7 95,830 + -3.8 95,907 + +0.5 95,907 + -3.8 95,908 - +0.9 95,908 - +2.9 95,908 - +0.3 95,908 - +0.2 95,918 - -2.4 95,934 + -0.3 95,940 + +0.3 95,940 + +1.3 95,940 + +3.5 95,940 + +0.2 95,941 - +2.7 95,941 - +1.0 95,942 + +0.9 95,942 + -1.9 95,942 + -0.8 95,942 + -1.0 95,943 - -0.8 95,943 - +0.5 95,943 - -2.5 95,943 - +0.5 95,943 - -0.7 95,952 - -3.0 95,985 - +1.6 95,992 - -1.0 96,063 + +2.1 96,120 - IAI47_19355 0.17 -1.3 96,131 + IAI47_19355 0.18 -1.1 96,188 + IAI47_19355 0.26 +0.8 96,188 + IAI47_19355 0.26 +0.2 96,189 - IAI47_19355 0.26 +4.3 96,221 + IAI47_19355 0.30 -0.3 96,222 - IAI47_19355 0.30 +2.2 96,222 - IAI47_19355 0.30 +0.2 96,222 - IAI47_19355 0.30 -0.7 96,245 - IAI47_19355 0.33 -1.9 96,303 + IAI47_19355 0.41 -0.3 96,304 - IAI47_19355 0.41 -1.4 96,347 - IAI47_19355 0.47 +1.8 96,358 + IAI47_19355 0.49 -0.3 96,358 + IAI47_19355 0.49 -2.4 96,366 - IAI47_19355 0.50 -1.7 96,392 + IAI47_19355 0.53 -0.9 96,501 + IAI47_19355 0.68 +0.8 96,517 + IAI47_19355 0.70 +0.6 96,518 - IAI47_19355 0.70 -2.0 96,640 + IAI47_19355 0.87 +1.3 96,666 + +1.8 96,669 - -0.8 96,693 + -0.8 96,693 + +1.2 96,693 + +1.9 96,693 + +0.7 96,694 - -1.0 96,694 - +0.1 96,697 + -0.0 96,697 + -1.1 96,697 + +1.4 96,697 + +0.6 96,698 - -0.2 96,698 - -2.8 96,698 - -2.2 96,698 - -0.9
Or see this region's nucleotide sequence