Strain Fitness in Pantoea sp. MT58 around IAI47_17285

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,662,004	+				-2.3
3,662,005	-				+0.4
3,662,011	+				-1.1
3,662,012	-				+1.5
3,662,012	-				+1.1
3,662,012	-				+2.1
3,662,012	-				-0.1
3,662,012	-				-1.8
3,662,025	+				+1.0
3,662,025	+				-0.7
3,662,070	+				+0.3
3,662,088	+				+3.1
3,662,088	+				-0.9
3,662,088	+				-1.7
3,662,089	-				+3.7
3,662,089	-				-0.8
3,662,089	-				-0.1
3,662,089	-				-2.1
3,662,090	+				+1.3
3,662,091	-				-0.7
3,662,091	-				-0.3
3,662,091	-				+0.5
3,662,094	+				-1.5
3,662,094	+				-2.8
3,662,095	-				+0.4
3,662,095	-				-1.7
3,662,103	-				+0.1
3,662,123	+				-0.2
3,662,123	+				-0.1
3,662,123	+				+0.7
3,662,123	+				-1.3
3,662,123	+				-1.3
3,662,123	+				-1.8
3,662,124	-				+1.3
3,662,124	-				-0.1
3,662,124	-				+0.5
3,662,124	-				+2.6
3,662,124	-				-0.9
3,662,124	-				+3.1
3,662,124	-				+0.6
3,662,124	-				+1.6
3,662,183	+		IAI47_17275	0.11	+1.1
3,662,184	-		IAI47_17275	0.11	+1.6
3,662,184	-		IAI47_17275	0.11	+0.9
3,662,184	-		IAI47_17275	0.11	-2.2
3,662,186	+		IAI47_17275	0.12	+0.2
3,662,186	+		IAI47_17275	0.12	-1.6
3,662,186	+		IAI47_17275	0.12	-0.4
3,662,186	+		IAI47_17275	0.12	-0.8
3,662,186	+		IAI47_17275	0.12	-1.6
3,662,187	-		IAI47_17275	0.12	-0.4
3,662,187	-		IAI47_17275	0.12	-1.7
3,662,212	+		IAI47_17275	0.17	+0.3
3,662,212	+		IAI47_17275	0.17	+1.9
3,662,213	-		IAI47_17275	0.17	-0.3
3,662,213	-		IAI47_17275	0.17	+0.4
3,662,213	-		IAI47_17275	0.17	+2.7
3,662,213	-		IAI47_17275	0.17	+0.4
3,662,213	-		IAI47_17275	0.17	+0.5
3,662,213	-		IAI47_17275	0.17	-1.0
3,662,216	+		IAI47_17275	0.18	-0.4
3,662,217	-		IAI47_17275	0.18	+1.3
3,662,217	-		IAI47_17275	0.18	-0.1
3,662,217	-		IAI47_17275	0.18	+0.7
3,662,217	-		IAI47_17275	0.18	-0.3
3,662,217	-		IAI47_17275	0.18	+0.4
3,662,235	+		IAI47_17275	0.21	+0.7
3,662,235	+		IAI47_17275	0.21	-0.0
3,662,236	-		IAI47_17275	0.21	-0.3
3,662,250	+		IAI47_17275	0.24	-2.6
3,662,250	+		IAI47_17275	0.24	-0.7
3,662,251	-		IAI47_17275	0.24	-0.3
3,662,251	-		IAI47_17275	0.24	-1.2
3,662,251	-		IAI47_17275	0.24	+0.1
3,662,300	-		IAI47_17275	0.34	+0.5
3,662,310	+		IAI47_17275	0.35	-2.4
3,662,311	-		IAI47_17275	0.36	+2.7
3,662,355	+		IAI47_17275	0.44	-1.7
3,662,356	-		IAI47_17275	0.44	-0.8
3,662,356	-		IAI47_17275	0.44	+1.3
3,662,356	-		IAI47_17275	0.44	+0.6
3,662,364	-		IAI47_17275	0.46	-1.0
3,662,364	-		IAI47_17275	0.46	-1.4
3,662,400	+		IAI47_17275	0.53	-0.8
3,662,400	+		IAI47_17275	0.53	+1.4
3,662,400	+		IAI47_17275	0.53	-1.8
3,662,401	-		IAI47_17275	0.53	+2.9
3,662,401	-		IAI47_17275	0.53	-1.6
3,662,401	-		IAI47_17275	0.53	-1.3
3,662,401	-		IAI47_17275	0.53	-0.3
3,662,457	+		IAI47_17275	0.63	+1.7
3,662,457	+		IAI47_17275	0.63	-1.3
3,662,457	+		IAI47_17275	0.63	-2.7
3,662,457	+		IAI47_17275	0.63	-0.5
3,662,458	-		IAI47_17275	0.64	-0.8
3,662,458	-		IAI47_17275	0.64	-0.1
3,662,458	-		IAI47_17275	0.64	+0.1
3,662,458	-		IAI47_17275	0.64	+0.3
3,662,466	+		IAI47_17275	0.65	+0.5
3,662,500	-		IAI47_17275	0.72	-1.6
3,662,529	+		IAI47_17275	0.77	+0.8
3,662,529	+		IAI47_17275	0.77	+0.7
3,662,530	-		IAI47_17275	0.77	+0.7
3,662,539	+		IAI47_17275	0.79	-1.8
3,662,540	-		IAI47_17275	0.79	+4.4
3,662,626	+				+0.1
3,662,627	-				+0.7
3,662,627	-				-2.5
3,662,627	-				+0.3
3,662,627	-				-1.5
3,662,646	+				+1.5
3,662,647	-				-1.4
3,662,647	-				-1.9
3,662,698	-				+0.6
3,662,698	-				-2.4
3,662,698	-				-0.6
3,662,698	-				-0.2
3,662,705	+				+1.0
3,662,705	+				+0.4
3,662,705	+				+0.5
3,662,705	+				+0.4
3,662,705	+				+1.0
3,662,706	-				+0.5
3,662,769	+		IAI47_17280	0.48	-0.3
3,662,769	+		IAI47_17280	0.48	+2.7
3,662,769	+		IAI47_17280	0.48	+0.3
3,662,770	-		IAI47_17280	0.49	-3.4
3,662,770	-		IAI47_17280	0.49	-1.8
3,662,770	-		IAI47_17280	0.49	-1.7
3,662,770	-		IAI47_17280	0.49	-0.7
3,662,770	-		IAI47_17280	0.49	-2.1
3,662,770	-		IAI47_17280	0.49	+2.0
3,662,770	-		IAI47_17280	0.49	+1.2
3,662,772	+		IAI47_17280	0.50	+1.1
3,662,772	+		IAI47_17280	0.50	+0.4
3,662,772	+		IAI47_17280	0.50	-0.5
3,662,772	+		IAI47_17280	0.50	+2.2
3,662,773	-		IAI47_17280	0.51	-1.1
3,662,773	-		IAI47_17280	0.51	+1.5
3,662,803	+		IAI47_17280	0.73	-0.3
3,662,803	+		IAI47_17280	0.73	+2.3
3,662,803	+		IAI47_17280	0.73	-2.2
3,662,804	-		IAI47_17280	0.74	-0.1
3,662,804	-		IAI47_17280	0.74	+1.3
3,662,833	+				-2.3
3,662,838	+				-0.1
3,662,838	+				-0.3
3,662,838	+				+3.7
3,662,838	+				-0.4
3,662,839	-				+0.6
3,662,839	-				+2.2
3,662,839	-				-0.3
3,662,839	-				-1.3
3,662,839	-				+1.4
3,662,862	+				-0.6
3,662,862	+				+1.7
3,662,862	+				-2.6
3,662,862	+				-2.1
3,662,862	+				-4.0
3,662,863	-				-0.9
3,662,863	-				+1.7
3,662,863	-				-2.4
3,662,863	-				+0.3
3,662,863	-				-0.0
3,662,863	-				-0.7
3,662,867	+				+1.3
3,662,867	+				-2.3
3,662,867	+				-1.8
3,662,868	-				-3.4
3,662,868	-				-1.3
3,662,877	+				-0.5
3,662,877	+				+2.1
3,662,877	+				-0.5
3,662,936	+				+0.3
3,662,970	+		IAI47_17285	0.23	-1.3
3,662,970	+		IAI47_17285	0.23	+0.3
3,662,970	+		IAI47_17285	0.23	-1.2
3,662,970	+		IAI47_17285	0.23	-1.4
3,662,970	+		IAI47_17285	0.23	-0.6
3,662,971	-		IAI47_17285	0.23	+1.4
3,663,018	+		IAI47_17285	0.59	-1.8
3,663,052	-		IAI47_17285	0.85	-2.8
3,663,125	-				+1.6
3,663,125	-				-0.1