Strain Fitness in Pantoea sp. MT58 around IAI47_12625

Experiment: Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH7.4; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,653,950	+		IAI47_12620	0.58	+0.8
2,653,950	+		IAI47_12620	0.58	+0.4
2,653,951	-		IAI47_12620	0.58	-1.7
2,653,951	-		IAI47_12620	0.58	+3.5
2,653,951	-		IAI47_12620	0.58	-2.0
2,653,951	-		IAI47_12620	0.58	-1.0
2,653,951	-		IAI47_12620	0.58	+1.5
2,653,953	+		IAI47_12620	0.58	-0.2
2,653,953	+		IAI47_12620	0.58	-2.5
2,653,954	-		IAI47_12620	0.58	-1.1
2,653,968	+		IAI47_12620	0.59	-0.0
2,653,968	+		IAI47_12620	0.59	-2.0
2,653,968	+		IAI47_12620	0.59	-0.4
2,653,968	+		IAI47_12620	0.59	+1.5
2,653,968	+		IAI47_12620	0.59	+1.9
2,653,969	-		IAI47_12620	0.59	+1.7
2,653,969	-		IAI47_12620	0.59	-0.5
2,653,969	-		IAI47_12620	0.59	+2.3
2,653,969	-		IAI47_12620	0.59	+0.5
2,653,971	+		IAI47_12620	0.59	-0.1
2,653,971	+		IAI47_12620	0.59	-1.0
2,653,971	+		IAI47_12620	0.59	-3.2
2,653,971	+		IAI47_12620	0.59	+1.3
2,653,972	-		IAI47_12620	0.59	-2.0
2,653,972	-		IAI47_12620	0.59	+2.1
2,653,972	-		IAI47_12620	0.59	-0.1
2,654,034	+		IAI47_12620	0.62	+0.8
2,654,034	+		IAI47_12620	0.62	-2.3
2,654,269	+		IAI47_12620	0.73	-3.3
2,654,269	+		IAI47_12620	0.73	-3.4
2,654,269	+		IAI47_12620	0.73	+1.1
2,654,269	+		IAI47_12620	0.73	+1.1
2,654,270	-		IAI47_12620	0.73	-1.1
2,654,270	-		IAI47_12620	0.73	+0.5
2,654,270	-		IAI47_12620	0.73	+1.7
2,654,270	-		IAI47_12620	0.73	-2.4
2,654,270	-		IAI47_12620	0.73	-0.5
2,654,270	-		IAI47_12620	0.73	+1.8
2,654,275	-		IAI47_12620	0.74	+1.5
2,654,385	+		IAI47_12620	0.79	+1.3
2,654,386	-		IAI47_12620	0.79	+3.0
2,654,509	+		IAI47_12620	0.85	-1.9
2,654,510	-		IAI47_12620	0.85	-1.3
2,654,567	+		IAI47_12620	0.88	+0.1
2,654,567	+		IAI47_12620	0.88	+1.1
2,654,568	-		IAI47_12620	0.88	-1.3
2,654,568	-		IAI47_12620	0.88	-0.4
2,654,656	+				+0.5
2,654,657	-				-1.5
2,654,657	-				+0.1
2,654,686	+				+2.5
2,654,708	+				+0.1
2,654,709	-				+0.4
2,654,709	-				-1.3
2,654,709	-				-0.1
2,654,709	-				+1.0
2,654,709	-				+1.5
2,654,709	-				-0.5
2,654,709	-				+0.8
2,654,719	-				+0.5
2,654,719	-				+1.8
2,654,763	+				-1.4
2,654,763	+				+0.4
2,654,763	+				-0.0
2,654,763	+				+0.1
2,654,763	+				+1.6
2,654,763	+				+0.5
2,654,764	-				-0.5
2,654,764	-				-2.3
2,654,764	-				-2.9
2,654,765	+				-1.3
2,654,765	+				+0.4
2,654,765	+				+2.8
2,654,765	+				+1.6
2,654,765	+				-1.2
2,654,765	+				-0.7
2,654,766	-				-0.6
2,654,766	-				-1.1
2,654,766	-				+1.0
2,654,766	-				+0.1
2,654,766	-				-0.9
2,654,766	-				-1.0
2,654,833	+				+0.6
2,654,834	-				+4.5
2,654,843	-				-1.2
2,654,843	-				-0.9
2,654,843	-				-1.1
2,654,853	+				+0.2
2,654,853	+				+0.2
2,654,853	+				-0.1
2,654,854	-				-0.8
2,654,854	-				-0.8
2,654,854	-				+6.2
2,654,854	-				-1.9
2,654,854	-				+2.0
2,654,868	+				-1.3
2,654,882	+				-4.0
2,654,883	-				+0.5
2,654,892	+				-2.0
2,654,892	+				+0.2
2,654,892	+				-3.4
2,654,892	+				-1.1
2,654,892	+				-0.1
2,654,893	-				-1.3
2,654,893	-				+0.7
2,654,893	-				-0.8
2,654,893	-				-0.2
2,654,893	-				+0.0
2,654,951	+				-0.4
2,654,951	+				+1.2
2,654,951	+				-0.4
2,654,955	+				+0.1
2,654,956	-				-0.0
2,654,962	-				-1.6
2,655,014	+		IAI47_12625	0.17	-1.6
2,655,014	+		IAI47_12625	0.17	-2.1
2,655,014	+		IAI47_12625	0.17	+0.5
2,655,014	+		IAI47_12625	0.17	-0.4
2,655,014	+		IAI47_12625	0.17	+0.4
2,655,014	+		IAI47_12625	0.17	-2.9
2,655,014	+		IAI47_12625	0.17	-0.2
2,655,015	-		IAI47_12625	0.17	-0.9
2,655,015	-		IAI47_12625	0.17	+1.7
2,655,015	-		IAI47_12625	0.17	-0.8
2,655,015	-		IAI47_12625	0.17	+0.3
2,655,015	-		IAI47_12625	0.17	-3.0
2,655,070	-		IAI47_12625	0.30	-1.1
2,655,135	+		IAI47_12625	0.45	-1.3
2,655,135	+		IAI47_12625	0.45	-0.2
2,655,135	+		IAI47_12625	0.45	-2.0
2,655,135	+		IAI47_12625	0.45	-4.1
2,655,135	+		IAI47_12625	0.45	+3.0
2,655,135	+		IAI47_12625	0.45	-1.1
2,655,136	-		IAI47_12625	0.45	+1.2
2,655,136	-		IAI47_12625	0.45	+0.5
2,655,136	-		IAI47_12625	0.45	-1.4
2,655,136	-		IAI47_12625	0.45	+1.0
2,655,136	-		IAI47_12625	0.45	+0.3
2,655,144	+		IAI47_12625	0.47	-0.7
2,655,144	+		IAI47_12625	0.47	+1.3
2,655,145	-		IAI47_12625	0.47	+0.5
2,655,145	-		IAI47_12625	0.47	-0.8
2,655,219	+		IAI47_12625	0.64	+0.1
2,655,219	+		IAI47_12625	0.64	+1.6
2,655,219	+		IAI47_12625	0.64	-3.0
2,655,219	+		IAI47_12625	0.64	+1.6
2,655,219	+		IAI47_12625	0.64	+2.8
2,655,219	+		IAI47_12625	0.64	+1.1
2,655,220	-		IAI47_12625	0.64	-0.5
2,655,220	-		IAI47_12625	0.64	-0.5
2,655,220	-		IAI47_12625	0.64	-1.8
2,655,220	-		IAI47_12625	0.64	-2.3
2,655,220	-		IAI47_12625	0.64	+0.5
2,655,282	+		IAI47_12625	0.78	+2.3
2,655,282	+		IAI47_12625	0.78	-2.8
2,655,282	+		IAI47_12625	0.78	-2.2
2,655,376	+				-0.2
2,655,376	+				-0.3
2,655,376	+				-0.9
2,655,376	+				+0.8
2,655,377	-				-0.4
2,655,377	-				-2.1
2,655,377	-				+1.1
2,655,377	-				+1.5
2,655,377	-				+0.1
2,655,379	+				-0.1
2,655,379	+				+0.5
2,655,379	+				+1.1
2,655,379	+				+2.0
2,655,379	+				+1.1
2,655,379	+				-0.4
2,655,379	+				-0.3
2,655,379	+				-1.3
2,655,380	-				+1.3
2,655,380	-				-1.6
2,655,380	-				-2.6
2,655,380	-				-0.2
2,655,380	-				+1.1
2,655,380	-				+0.2
2,655,380	-				+0.6
2,655,422	-				+0.9
2,655,422	-				-0.0
2,655,424	+				+1.5
2,655,424	+				+0.7
2,655,424	+				+0.7
2,655,425	-				-0.1
2,655,425	-				+0.5
2,655,425	-				+1.5
2,655,425	-				-2.8
2,655,427	+				+1.8
2,655,428	-				-1.2
2,655,428	-				-0.9
2,655,428	-				-1.1
2,655,428	-				+0.2
2,655,595	+		IAI47_12630	0.11	-1.7
2,655,630	+		IAI47_12630	0.12	-0.3
2,655,661	+		IAI47_12630	0.14	+1.6
2,655,661	+		IAI47_12630	0.14	-1.1
2,655,661	+		IAI47_12630	0.14	-2.8
2,655,662	-		IAI47_12630	0.14	-0.1
2,655,662	-		IAI47_12630	0.14	-2.1
2,655,662	-		IAI47_12630	0.14	-0.8
2,655,694	+		IAI47_12630	0.15	+0.0
2,655,695	-		IAI47_12630	0.15	+0.3
2,655,723	-		IAI47_12630	0.17	-0.8
2,655,730	+		IAI47_12630	0.17	+0.1
2,655,762	-		IAI47_12630	0.19	+0.9
2,655,762	-		IAI47_12630	0.19	-2.3
2,655,762	-		IAI47_12630	0.19	-0.1
2,655,763	+		IAI47_12630	0.19	-1.1
2,655,763	+		IAI47_12630	0.19	-0.1
2,655,763	+		IAI47_12630	0.19	-1.3
2,655,763	+		IAI47_12630	0.19	+0.7
2,655,763	+		IAI47_12630	0.19	+0.9
2,655,763	+		IAI47_12630	0.19	-2.7
2,655,764	-		IAI47_12630	0.19	-3.5
2,655,764	-		IAI47_12630	0.19	-1.1
2,655,764	-		IAI47_12630	0.19	-3.0
2,655,764	-		IAI47_12630	0.19	-0.1
2,655,764	-		IAI47_12630	0.19	+0.8
2,655,764	-		IAI47_12630	0.19	-2.3
2,655,797	+		IAI47_12630	0.20	+1.3
2,655,797	+		IAI47_12630	0.20	-1.7
2,655,797	+		IAI47_12630	0.20	-4.1
2,655,797	+		IAI47_12630	0.20	-0.1
2,655,797	+		IAI47_12630	0.20	-1.1
2,655,797	+		IAI47_12630	0.20	+0.8
2,655,798	-		IAI47_12630	0.20	-0.4
2,655,798	-		IAI47_12630	0.20	-1.4
2,655,798	-		IAI47_12630	0.20	-0.5
2,655,798	-		IAI47_12630	0.20	+0.1
2,655,798	-		IAI47_12630	0.20	-1.2
2,655,798	-		IAI47_12630	0.20	-1.3
2,655,798	-		IAI47_12630	0.20	+0.4
2,655,798	-		IAI47_12630	0.20	+1.1
2,655,798	-		IAI47_12630	0.20	+0.1
2,655,799	+		IAI47_12630	0.20	+0.2
2,655,799	+		IAI47_12630	0.20	-1.0
2,655,799	+		IAI47_12630	0.20	-1.0
2,655,799	+		IAI47_12630	0.20	-0.5
2,655,799	+		IAI47_12630	0.20	+0.4
2,655,799	+		IAI47_12630	0.20	+0.3
2,655,836	+		IAI47_12630	0.22	-0.5
2,655,836	+		IAI47_12630	0.22	-2.4
2,655,836	+		IAI47_12630	0.22	+2.2
2,655,837	-		IAI47_12630	0.22	+0.4
2,655,837	-		IAI47_12630	0.22	-3.6
2,655,837	-		IAI47_12630	0.22	-0.3
2,655,837	-		IAI47_12630	0.22	+0.5
2,655,927	-		IAI47_12630	0.26	+0.3
2,655,988	+		IAI47_12630	0.29	-2.1
2,655,988	+		IAI47_12630	0.29	+1.3
2,656,017	+		IAI47_12630	0.30	-0.8
2,656,017	+		IAI47_12630	0.30	+2.0
2,656,017	+		IAI47_12630	0.30	+0.8
2,656,017	+		IAI47_12630	0.30	-0.6
2,656,045	+		IAI47_12630	0.32	-1.6
2,656,046	-		IAI47_12630	0.32	+1.8
2,656,106	+		IAI47_12630	0.34	-0.1
2,656,107	-		IAI47_12630	0.34	-0.5
2,656,107	-		IAI47_12630	0.34	+2.5
2,656,109	+		IAI47_12630	0.35	-1.1
2,656,109	+		IAI47_12630	0.35	+1.1
2,656,109	+		IAI47_12630	0.35	-1.1
2,656,109	+		IAI47_12630	0.35	+0.5
2,656,109	+		IAI47_12630	0.35	+3.2
2,656,160	+		IAI47_12630	0.37	+3.3
2,656,161	-		IAI47_12630	0.37	+0.5
2,656,187	+		IAI47_12630	0.38	-0.9
2,656,187	+		IAI47_12630	0.38	+0.1
2,656,187	+		IAI47_12630	0.38	+0.4
2,656,187	+		IAI47_12630	0.38	+0.7
2,656,188	-		IAI47_12630	0.38	+0.2
2,656,188	-		IAI47_12630	0.38	-1.5
2,656,189	+		IAI47_12630	0.38	+0.0
2,656,222	+		IAI47_12630	0.40	+0.8
2,656,223	-		IAI47_12630	0.40	-1.0
2,656,223	-		IAI47_12630	0.40	+1.6
2,656,223	-		IAI47_12630	0.40	+1.8
2,656,369	+		IAI47_12630	0.47	-0.3
2,656,369	+		IAI47_12630	0.47	-0.9