Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3450 and Dsui_3451 are separated by 73 nucleotides Dsui_3451 and Dsui_3452 are separated by 172 nucleotides Dsui_3452 and Dsui_3453 are separated by 9 nucleotides
Dsui_3450: Dsui_3450 - acetyl-CoA hydrolase, at 3,710,607 to 3,711,902
_3450
Dsui_3451: Dsui_3451 - sugar phosphate permease, at 3,711,976 to 3,713,259
_3451
Dsui_3452: Dsui_3452 - cytidyltransferase-related enzyme, at 3,713,432 to 3,713,923
_3452
Dsui_3453: Dsui_3453 - cation diffusion facilitator family transporter, at 3,713,933 to 3,714,841
_3453
Position (kb)
3711
3712
3713
3714 Strain fitness (log2 ratio)
-2
-1
0
1 at 3711.028 kb on + strand, within Dsui_3450 at 3711.056 kb on - strand, within Dsui_3450 at 3711.111 kb on - strand, within Dsui_3450 at 3711.115 kb on + strand, within Dsui_3450 at 3711.163 kb on - strand, within Dsui_3450 at 3711.232 kb on + strand, within Dsui_3450 at 3711.345 kb on - strand, within Dsui_3450 at 3711.347 kb on + strand, within Dsui_3450 at 3711.353 kb on + strand, within Dsui_3450 at 3711.417 kb on - strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.442 kb on - strand, within Dsui_3450 at 3711.726 kb on - strand, within Dsui_3450 at 3711.726 kb on - strand, within Dsui_3450 at 3711.784 kb on + strand at 3711.789 kb on + strand at 3711.843 kb on + strand at 3711.904 kb on - strand at 3711.981 kb on + strand at 3712.319 kb on - strand, within Dsui_3451 at 3712.335 kb on + strand, within Dsui_3451 at 3712.395 kb on + strand, within Dsui_3451 at 3712.452 kb on + strand, within Dsui_3451 at 3712.487 kb on - strand, within Dsui_3451 at 3712.494 kb on + strand, within Dsui_3451 at 3712.519 kb on + strand, within Dsui_3451 at 3712.608 kb on - strand, within Dsui_3451 at 3712.655 kb on + strand, within Dsui_3451 at 3712.655 kb on + strand, within Dsui_3451 at 3712.716 kb on - strand, within Dsui_3451 at 3712.930 kb on + strand, within Dsui_3451 at 3712.941 kb on + strand at 3713.027 kb on - strand, within Dsui_3451 at 3713.027 kb on - strand, within Dsui_3451 at 3713.070 kb on - strand, within Dsui_3451 at 3713.122 kb on + strand at 3713.133 kb on + strand at 3713.135 kb on - strand at 3713.220 kb on - strand at 3713.273 kb on - strand at 3713.319 kb on - strand at 3713.347 kb on + strand at 3713.918 kb on + strand at 3713.926 kb on - strand at 3714.032 kb on - strand, within Dsui_3453 at 3714.104 kb on - strand, within Dsui_3453 at 3714.217 kb on + strand, within Dsui_3453
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 3,711,028 + Dsui_3450 0.32 -0.3 3,711,056 - Dsui_3450 0.35 -1.2 3,711,111 - Dsui_3450 0.39 -1.2 3,711,115 + Dsui_3450 0.39 -0.6 3,711,163 - Dsui_3450 0.43 +0.8 3,711,232 + Dsui_3450 0.48 -0.9 3,711,345 - Dsui_3450 0.57 -0.2 3,711,347 + Dsui_3450 0.57 -0.3 3,711,353 + Dsui_3450 0.58 -0.5 3,711,417 - Dsui_3450 0.62 -0.8 3,711,434 + Dsui_3450 0.64 -0.3 3,711,434 + Dsui_3450 0.64 -0.4 3,711,442 - Dsui_3450 0.64 -0.2 3,711,726 - Dsui_3450 0.86 +0.8 3,711,726 - Dsui_3450 0.86 -1.2 3,711,784 + -0.4 3,711,789 + -0.4 3,711,843 + -0.7 3,711,904 - +0.8 3,711,981 + +0.8 3,712,319 - Dsui_3451 0.27 -1.5 3,712,335 + Dsui_3451 0.28 +0.8 3,712,395 + Dsui_3451 0.33 -0.8 3,712,452 + Dsui_3451 0.37 +0.8 3,712,487 - Dsui_3451 0.40 +0.8 3,712,494 + Dsui_3451 0.40 -0.2 3,712,519 + Dsui_3451 0.42 +0.8 3,712,608 - Dsui_3451 0.49 +1.4 3,712,655 + Dsui_3451 0.53 -1.5 3,712,655 + Dsui_3451 0.53 +0.8 3,712,716 - Dsui_3451 0.58 -0.8 3,712,930 + Dsui_3451 0.74 -2.4 3,712,941 + -0.2 3,713,027 - Dsui_3451 0.82 -0.2 3,713,027 - Dsui_3451 0.82 -0.8 3,713,070 - Dsui_3451 0.85 -0.2 3,713,122 + +0.8 3,713,133 + -0.2 3,713,135 - -0.8 3,713,220 - -0.2 3,713,273 - -1.3 3,713,319 - -0.2 3,713,347 + +0.8 3,713,918 + -1.0 3,713,926 - +0.8 3,714,032 - Dsui_3453 0.11 +0.8 3,714,104 - Dsui_3453 0.19 +0.8 3,714,217 + Dsui_3453 0.31 -0.1
Or see this region's nucleotide sequence