Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3407 and Dsui_3408 are separated by 84 nucleotides Dsui_3408 and Dsui_3409 are separated by 135 nucleotides Dsui_3409 and Dsui_3410 are separated by 68 nucleotides
Dsui_3407: Dsui_3407 - methylase of polypeptide chain release factors, at 3,660,825 to 3,661,949
_3407
Dsui_3408: Dsui_3408 - hypothetical protein, at 3,662,034 to 3,662,444
_3408
Dsui_3409: Dsui_3409 - hypothetical protein, at 3,662,580 to 3,663,146
_3409
Dsui_3410: Dsui_3410 - serine/threonine protein phosphatase, at 3,663,215 to 3,663,955
_3410
Position (kb)
3662
3663 Strain fitness (log2 ratio)
-2
-1
0
1 at 3661.043 kb on + strand, within Dsui_3407 at 3661.050 kb on + strand, within Dsui_3407 at 3661.051 kb on - strand, within Dsui_3407 at 3661.074 kb on + strand, within Dsui_3407 at 3661.110 kb on + strand, within Dsui_3407 at 3661.118 kb on - strand at 3661.123 kb on - strand at 3661.138 kb on - strand at 3661.383 kb on - strand, within Dsui_3407 at 3661.384 kb on - strand, within Dsui_3407 at 3661.483 kb on + strand, within Dsui_3407 at 3661.497 kb on + strand, within Dsui_3407 at 3661.520 kb on - strand, within Dsui_3407 at 3661.550 kb on - strand at 3661.569 kb on - strand at 3661.638 kb on + strand, within Dsui_3407 at 3661.756 kb on + strand, within Dsui_3407 at 3661.865 kb on + strand at 3661.924 kb on - strand at 3662.017 kb on - strand at 3662.071 kb on - strand at 3662.087 kb on - strand, within Dsui_3408 at 3662.096 kb on - strand at 3662.183 kb on + strand, within Dsui_3408 at 3662.191 kb on - strand, within Dsui_3408 at 3662.192 kb on - strand, within Dsui_3408 at 3662.218 kb on + strand, within Dsui_3408 at 3662.279 kb on - strand, within Dsui_3408 at 3662.351 kb on - strand, within Dsui_3408 at 3662.363 kb on - strand, within Dsui_3408 at 3662.365 kb on - strand, within Dsui_3408 at 3662.389 kb on + strand, within Dsui_3408 at 3662.420 kb on - strand at 3662.430 kb on - strand at 3662.457 kb on + strand at 3662.621 kb on - strand at 3662.669 kb on - strand at 3662.734 kb on + strand at 3662.734 kb on + strand at 3662.756 kb on - strand, within Dsui_3409 at 3662.768 kb on + strand, within Dsui_3409 at 3662.836 kb on + strand, within Dsui_3409 at 3662.844 kb on - strand, within Dsui_3409 at 3662.844 kb on - strand at 3662.879 kb on - strand, within Dsui_3409 at 3662.908 kb on + strand, within Dsui_3409 at 3662.922 kb on - strand at 3663.000 kb on + strand, within Dsui_3409 at 3663.008 kb on - strand, within Dsui_3409 at 3663.015 kb on + strand at 3663.083 kb on + strand, within Dsui_3409 at 3663.105 kb on + strand at 3663.113 kb on - strand at 3663.213 kb on + strand at 3663.243 kb on + strand at 3663.248 kb on + strand at 3663.267 kb on - strand at 3663.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 3,661,043 + Dsui_3407 0.19 -1.7 3,661,050 + Dsui_3407 0.20 -0.8 3,661,051 - Dsui_3407 0.20 -1.8 3,661,074 + Dsui_3407 0.22 -1.0 3,661,110 + Dsui_3407 0.25 +0.2 3,661,118 - +0.8 3,661,123 - -0.2 3,661,138 - +0.8 3,661,383 - Dsui_3407 0.50 -1.8 3,661,384 - Dsui_3407 0.50 +0.8 3,661,483 + Dsui_3407 0.58 -1.1 3,661,497 + Dsui_3407 0.60 -1.1 3,661,520 - Dsui_3407 0.62 -2.0 3,661,550 - -0.2 3,661,569 - +0.8 3,661,638 + Dsui_3407 0.72 +0.1 3,661,756 + Dsui_3407 0.83 -0.6 3,661,865 + -1.8 3,661,924 - +0.8 3,662,017 - +0.8 3,662,071 - -1.7 3,662,087 - Dsui_3408 0.13 -1.2 3,662,096 - +0.8 3,662,183 + Dsui_3408 0.36 -1.2 3,662,191 - Dsui_3408 0.38 +0.8 3,662,192 - Dsui_3408 0.38 -0.8 3,662,218 + Dsui_3408 0.45 -1.2 3,662,279 - Dsui_3408 0.60 -0.5 3,662,351 - Dsui_3408 0.77 -0.8 3,662,363 - Dsui_3408 0.80 -1.2 3,662,365 - Dsui_3408 0.81 -2.2 3,662,389 + Dsui_3408 0.86 +0.8 3,662,420 - -0.5 3,662,430 - -1.8 3,662,457 + -0.8 3,662,621 - +0.8 3,662,669 - +0.8 3,662,734 + -1.2 3,662,734 + -0.2 3,662,756 - Dsui_3409 0.31 -0.8 3,662,768 + Dsui_3409 0.33 -0.8 3,662,836 + Dsui_3409 0.45 -0.8 3,662,844 - Dsui_3409 0.47 +0.8 3,662,844 - -0.2 3,662,879 - Dsui_3409 0.53 +0.8 3,662,908 + Dsui_3409 0.58 +0.8 3,662,922 - +0.8 3,663,000 + Dsui_3409 0.74 -0.2 3,663,008 - Dsui_3409 0.75 -0.2 3,663,015 + +0.8 3,663,083 + Dsui_3409 0.89 -0.8 3,663,105 + -0.8 3,663,113 - -1.2 3,663,213 + -1.8 3,663,243 + +0.8 3,663,248 + -0.8 3,663,267 - +0.8 3,663,267 - -0.8
Or see this region's nucleotide sequence