Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3232 and Dsui_3233 are separated by 14 nucleotides Dsui_3233 and Dsui_3234 are separated by 69 nucleotides Dsui_3234 and Dsui_3235 are separated by 76 nucleotides
Dsui_3232: Dsui_3232 - activator of osmoprotectant transporter ProP, at 3,474,846 to 3,475,268
_3232
Dsui_3233: Dsui_3233 - hypothetical protein, at 3,475,283 to 3,475,750
_3233
Dsui_3234: Dsui_3234 - putative proteasome-type protease, at 3,475,820 to 3,476,548
_3234
Dsui_3235: Dsui_3235 - hypothetical protein, at 3,476,625 to 3,477,569
_3235
Position (kb)
3475
3476
3477 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3474.850 kb on + strand at 3474.973 kb on - strand at 3475.117 kb on + strand, within Dsui_3232 at 3475.139 kb on + strand, within Dsui_3232 at 3475.195 kb on - strand, within Dsui_3232 at 3475.278 kb on - strand at 3475.573 kb on + strand, within Dsui_3233 at 3475.581 kb on - strand, within Dsui_3233 at 3475.665 kb on - strand at 3475.667 kb on + strand, within Dsui_3233 at 3475.725 kb on - strand at 3475.766 kb on + strand at 3475.774 kb on - strand at 3475.831 kb on - strand at 3475.935 kb on + strand, within Dsui_3234 at 3475.935 kb on + strand, within Dsui_3234 at 3475.990 kb on + strand, within Dsui_3234 at 3476.041 kb on + strand, within Dsui_3234 at 3476.041 kb on + strand at 3476.041 kb on + strand, within Dsui_3234 at 3476.042 kb on + strand, within Dsui_3234 at 3476.130 kb on - strand, within Dsui_3234 at 3476.169 kb on + strand, within Dsui_3234 at 3476.184 kb on + strand, within Dsui_3234 at 3476.308 kb on + strand, within Dsui_3234 at 3476.316 kb on - strand, within Dsui_3234 at 3476.410 kb on + strand, within Dsui_3234 at 3476.421 kb on - strand, within Dsui_3234 at 3476.433 kb on - strand, within Dsui_3234 at 3476.437 kb on + strand, within Dsui_3234 at 3476.437 kb on + strand, within Dsui_3234 at 3476.443 kb on + strand, within Dsui_3234 at 3476.460 kb on + strand, within Dsui_3234 at 3476.468 kb on + strand, within Dsui_3234 at 3476.468 kb on - strand, within Dsui_3234 at 3476.470 kb on + strand, within Dsui_3234 at 3476.471 kb on + strand, within Dsui_3234 at 3476.479 kb on - strand at 3476.502 kb on + strand at 3476.544 kb on + strand at 3476.616 kb on - strand at 3476.651 kb on - strand at 3476.664 kb on - strand at 3476.674 kb on - strand at 3476.750 kb on - strand, within Dsui_3235 at 3476.806 kb on + strand at 3476.827 kb on - strand, within Dsui_3235 at 3476.854 kb on - strand at 3476.861 kb on - strand, within Dsui_3235 at 3476.861 kb on - strand, within Dsui_3235 at 3476.910 kb on + strand, within Dsui_3235 at 3476.918 kb on - strand, within Dsui_3235 at 3476.925 kb on + strand, within Dsui_3235 at 3476.996 kb on - strand, within Dsui_3235 at 3477.073 kb on - strand, within Dsui_3235 at 3477.087 kb on + strand, within Dsui_3235 at 3477.135 kb on + strand, within Dsui_3235 at 3477.143 kb on - strand, within Dsui_3235 at 3477.187 kb on + strand, within Dsui_3235 at 3477.195 kb on - strand, within Dsui_3235 at 3477.197 kb on + strand, within Dsui_3235 at 3477.205 kb on - strand, within Dsui_3235 at 3477.249 kb on - strand, within Dsui_3235 at 3477.309 kb on + strand, within Dsui_3235 at 3477.317 kb on - strand, within Dsui_3235 at 3477.319 kb on + strand, within Dsui_3235 at 3477.379 kb on + strand, within Dsui_3235 at 3477.379 kb on + strand, within Dsui_3235 at 3477.379 kb on + strand, within Dsui_3235 at 3477.379 kb on + strand, within Dsui_3235 at 3477.409 kb on - strand, within Dsui_3235 at 3477.419 kb on + strand, within Dsui_3235 at 3477.538 kb on + strand at 3477.538 kb on + strand at 3477.546 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 3,474,850 + -1.0 3,474,973 - +0.7 3,475,117 + Dsui_3232 0.64 -0.4 3,475,139 + Dsui_3232 0.69 -0.6 3,475,195 - Dsui_3232 0.83 -0.3 3,475,278 - -0.8 3,475,573 + Dsui_3233 0.62 -0.0 3,475,581 - Dsui_3233 0.64 -0.8 3,475,665 - +0.7 3,475,667 + Dsui_3233 0.82 -1.3 3,475,725 - -0.3 3,475,766 + -0.6 3,475,774 - -2.6 3,475,831 - +0.1 3,475,935 + Dsui_3234 0.16 +0.8 3,475,935 + Dsui_3234 0.16 -1.8 3,475,990 + Dsui_3234 0.23 -1.2 3,476,041 + Dsui_3234 0.30 -1.2 3,476,041 + +0.8 3,476,041 + Dsui_3234 0.30 -0.2 3,476,042 + Dsui_3234 0.30 +0.8 3,476,130 - Dsui_3234 0.43 -2.1 3,476,169 + Dsui_3234 0.48 -0.8 3,476,184 + Dsui_3234 0.50 +0.8 3,476,308 + Dsui_3234 0.67 -1.6 3,476,316 - Dsui_3234 0.68 -0.8 3,476,410 + Dsui_3234 0.81 -1.6 3,476,421 - Dsui_3234 0.82 -1.8 3,476,433 - Dsui_3234 0.84 +0.8 3,476,437 + Dsui_3234 0.85 -2.7 3,476,437 + Dsui_3234 0.85 -0.8 3,476,443 + Dsui_3234 0.85 +0.8 3,476,460 + Dsui_3234 0.88 +0.8 3,476,468 + Dsui_3234 0.89 +0.8 3,476,468 - Dsui_3234 0.89 +0.8 3,476,470 + Dsui_3234 0.89 -0.2 3,476,471 + Dsui_3234 0.89 +0.8 3,476,479 - +0.2 3,476,502 + -0.2 3,476,544 + -0.2 3,476,616 - +1.8 3,476,651 - -0.6 3,476,664 - -2.6 3,476,674 - -2.1 3,476,750 - Dsui_3235 0.13 -0.1 3,476,806 + +0.7 3,476,827 - Dsui_3235 0.21 +0.1 3,476,854 - -0.3 3,476,861 - Dsui_3235 0.25 -0.3 3,476,861 - Dsui_3235 0.25 -1.3 3,476,910 + Dsui_3235 0.30 -1.3 3,476,918 - Dsui_3235 0.31 +1.0 3,476,925 + Dsui_3235 0.32 -0.3 3,476,996 - Dsui_3235 0.39 -0.4 3,477,073 - Dsui_3235 0.47 -0.1 3,477,087 + Dsui_3235 0.49 -0.8 3,477,135 + Dsui_3235 0.54 -0.8 3,477,143 - Dsui_3235 0.55 -0.2 3,477,187 + Dsui_3235 0.59 -0.3 3,477,195 - Dsui_3235 0.60 -0.5 3,477,197 + Dsui_3235 0.61 -1.3 3,477,205 - Dsui_3235 0.61 +0.7 3,477,249 - Dsui_3235 0.66 -1.5 3,477,309 + Dsui_3235 0.72 -1.6 3,477,317 - Dsui_3235 0.73 -1.2 3,477,319 + Dsui_3235 0.73 +0.7 3,477,379 + Dsui_3235 0.80 +0.7 3,477,379 + Dsui_3235 0.80 +0.7 3,477,379 + Dsui_3235 0.80 -0.3 3,477,379 + Dsui_3235 0.80 +0.7 3,477,409 - Dsui_3235 0.83 +0.2 3,477,419 + Dsui_3235 0.84 -1.3 3,477,538 + -0.8 3,477,538 + +0.7 3,477,546 - -0.3
Or see this region's nucleotide sequence