Strain Fitness in Dechlorosoma suillum PS around Dsui_3212

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3211 and Dsui_3212 are separated by 69 nucleotidesDsui_3212 and Dsui_3213 are separated by 330 nucleotidesDsui_3213 and Dsui_3214 are separated by 125 nucleotides Dsui_3211: Dsui_3211 - glutamate dehydrogenase/leucine dehydrogenase, at 3,445,273 to 3,446,619 _3211 Dsui_3212: Dsui_3212 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,446,689 to 3,448,356 _3212 Dsui_3213: Dsui_3213 - CBS domain-containing protein, at 3,448,687 to 3,449,136 _3213 Dsui_3214: Dsui_3214 - ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing, at 3,449,262 to 3,452,603 _3214 Position (kb) 3446 3447 3448 3449Strain fitness (log2 ratio) -3 -2 -1 0 1at 3445.797 kb on - strandat 3445.889 kb on - strandat 3445.983 kb on - strand, within Dsui_3211at 3446.075 kb on + strand, within Dsui_3211at 3446.206 kb on - strand, within Dsui_3211at 3446.261 kb on + strand, within Dsui_3211at 3446.329 kb on - strand, within Dsui_3211at 3446.384 kb on + strand, within Dsui_3211at 3446.429 kb on + strand, within Dsui_3211at 3446.464 kb on - strand, within Dsui_3211at 3446.775 kb on + strandat 3446.798 kb on - strandat 3446.807 kb on + strandat 3446.817 kb on + strandat 3446.837 kb on + strandat 3446.892 kb on - strand, within Dsui_3212at 3446.979 kb on - strand, within Dsui_3212at 3447.062 kb on + strandat 3447.070 kb on - strand, within Dsui_3212at 3447.096 kb on + strand, within Dsui_3212at 3447.142 kb on + strand, within Dsui_3212at 3447.171 kb on + strandat 3447.237 kb on + strand, within Dsui_3212at 3447.245 kb on + strand, within Dsui_3212at 3447.246 kb on + strand, within Dsui_3212at 3447.358 kb on + strandat 3447.366 kb on - strand, within Dsui_3212at 3447.366 kb on - strand, within Dsui_3212at 3447.433 kb on + strandat 3447.438 kb on + strand, within Dsui_3212at 3447.474 kb on - strand, within Dsui_3212at 3447.486 kb on - strand, within Dsui_3212at 3447.540 kb on + strand, within Dsui_3212at 3447.549 kb on - strand, within Dsui_3212at 3447.559 kb on - strand, within Dsui_3212at 3447.561 kb on + strand, within Dsui_3212at 3447.634 kb on + strandat 3447.637 kb on - strand, within Dsui_3212at 3447.668 kb on + strand, within Dsui_3212at 3447.770 kb on + strandat 3447.783 kb on - strand, within Dsui_3212at 3447.799 kb on - strand, within Dsui_3212at 3447.852 kb on + strand, within Dsui_3212at 3447.860 kb on - strand, within Dsui_3212at 3447.937 kb on + strand, within Dsui_3212at 3447.945 kb on - strand, within Dsui_3212at 3447.948 kb on + strand, within Dsui_3212at 3447.956 kb on - strand, within Dsui_3212at 3448.039 kb on - strand, within Dsui_3212at 3448.056 kb on - strand, within Dsui_3212at 3448.061 kb on - strand, within Dsui_3212at 3448.084 kb on - strand, within Dsui_3212at 3448.102 kb on - strand, within Dsui_3212at 3448.120 kb on - strand, within Dsui_3212at 3448.144 kb on - strand, within Dsui_3212at 3448.202 kb on + strandat 3448.252 kb on - strandat 3448.254 kb on + strandat 3448.256 kb on + strandat 3448.259 kb on - strandat 3448.264 kb on - strandat 3448.366 kb on - strandat 3448.421 kb on - strandat 3448.472 kb on + strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.480 kb on - strandat 3448.603 kb on - strandat 3448.690 kb on + strandat 3448.809 kb on - strand, within Dsui_3213at 3448.900 kb on - strand, within Dsui_3213at 3449.065 kb on + strandat 3449.065 kb on + strandat 3449.087 kb on + strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.095 kb on - strandat 3449.183 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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3,445,797 - +0.7
3,445,889 - +0.7
3,445,983 - Dsui_3211 0.53 -0.3
3,446,075 + Dsui_3211 0.60 -0.6
3,446,206 - Dsui_3211 0.69 -0.3
3,446,261 + Dsui_3211 0.73 -0.1
3,446,329 - Dsui_3211 0.78 +0.7
3,446,384 + Dsui_3211 0.82 -0.2
3,446,429 + Dsui_3211 0.86 -0.3
3,446,464 - Dsui_3211 0.88 +0.7
3,446,775 + -0.3
3,446,798 - -0.5
3,446,807 + -0.3
3,446,817 + -2.1
3,446,837 + -1.6
3,446,892 - Dsui_3212 0.12 -0.2
3,446,979 - Dsui_3212 0.17 +0.5
3,447,062 + +0.7
3,447,070 - Dsui_3212 0.23 -0.0
3,447,096 + Dsui_3212 0.24 -0.8
3,447,142 + Dsui_3212 0.27 +0.7
3,447,171 + +0.7
3,447,237 + Dsui_3212 0.33 -0.3
3,447,245 + Dsui_3212 0.33 +0.7
3,447,246 + Dsui_3212 0.33 -1.8
3,447,358 + +0.7
3,447,366 - Dsui_3212 0.41 -0.0
3,447,366 - Dsui_3212 0.41 +0.9
3,447,433 + +0.7
3,447,438 + Dsui_3212 0.45 +0.7
3,447,474 - Dsui_3212 0.47 +0.3
3,447,486 - Dsui_3212 0.48 +0.0
3,447,540 + Dsui_3212 0.51 -0.8
3,447,549 - Dsui_3212 0.52 -0.1
3,447,559 - Dsui_3212 0.52 +0.1
3,447,561 + Dsui_3212 0.52 -1.6
3,447,634 + +0.7
3,447,637 - Dsui_3212 0.57 -1.3
3,447,668 + Dsui_3212 0.59 -1.3
3,447,770 + -0.3
3,447,783 - Dsui_3212 0.66 -3.7
3,447,799 - Dsui_3212 0.67 -0.2
3,447,852 + Dsui_3212 0.70 -0.3
3,447,860 - Dsui_3212 0.70 -0.4
3,447,937 + Dsui_3212 0.75 -2.1
3,447,945 - Dsui_3212 0.75 -0.4
3,447,948 + Dsui_3212 0.75 -2.3
3,447,956 - Dsui_3212 0.76 +0.2
3,448,039 - Dsui_3212 0.81 -0.6
3,448,056 - Dsui_3212 0.82 -0.2
3,448,061 - Dsui_3212 0.82 -0.6
3,448,084 - Dsui_3212 0.84 +0.0
3,448,102 - Dsui_3212 0.85 -0.0
3,448,120 - Dsui_3212 0.86 -0.6
3,448,144 - Dsui_3212 0.87 +0.3
3,448,202 + -0.3
3,448,252 - -0.4
3,448,254 + +0.7
3,448,256 + -0.8
3,448,259 - -0.5
3,448,264 - -2.0
3,448,366 - -0.3
3,448,421 - -0.2
3,448,472 + -0.8
3,448,480 - -0.3
3,448,480 - +0.7
3,448,480 - +0.7
3,448,480 - -0.3
3,448,480 - +0.7
3,448,603 - -0.3
3,448,690 + -1.6
3,448,809 - Dsui_3213 0.27 -1.5
3,448,900 - Dsui_3213 0.47 -1.2
3,449,065 + -0.3
3,449,065 + -0.3
3,449,087 + +0.7
3,449,095 - -1.2
3,449,095 - -1.3
3,449,095 - -1.1
3,449,095 - -1.5
3,449,183 - -0.5

Or see this region's nucleotide sequence