Strain Fitness in Dechlorosoma suillum PS around Dsui_3130

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3128 and Dsui_3129 are separated by 40 nucleotidesDsui_3129 and Dsui_3130 are separated by 244 nucleotidesDsui_3130 and Dsui_3131 are separated by 269 nucleotides Dsui_3128: Dsui_3128 - ribonuclease R, at 3,350,134 to 3,352,620 _3128 Dsui_3129: Dsui_3129 - tRNA-Leu, at 3,352,661 to 3,352,747 _3129 Dsui_3130: Dsui_3130 - tRNA-Leu, at 3,352,992 to 3,353,078 _3130 Dsui_3131: Dsui_3131 - adenylosuccinate synthase, at 3,353,348 to 3,354,658 _3131 Position (kb) 3352 3353 3354Strain fitness (log2 ratio) -2 -1 0 1at 3352.022 kb on + strand, within Dsui_3128at 3352.030 kb on - strand, within Dsui_3128at 3352.070 kb on - strand, within Dsui_3128at 3352.130 kb on - strand, within Dsui_3128at 3352.151 kb on - strand, within Dsui_3128at 3352.201 kb on + strandat 3352.257 kb on + strand, within Dsui_3128at 3352.324 kb on + strand, within Dsui_3128at 3352.325 kb on + strand, within Dsui_3128at 3352.331 kb on + strand, within Dsui_3128at 3352.332 kb on - strand, within Dsui_3128at 3352.332 kb on - strand, within Dsui_3128at 3352.415 kb on - strandat 3352.438 kb on + strandat 3352.958 kb on - strandat 3353.061 kb on + strand, within Dsui_3130at 3353.232 kb on + strandat 3353.269 kb on + strandat 3353.269 kb on + strandat 3353.277 kb on - strandat 3353.277 kb on - strandat 3353.277 kb on - strandat 3353.339 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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3,352,022 + Dsui_3128 0.76 -0.9
3,352,030 - Dsui_3128 0.76 -0.3
3,352,070 - Dsui_3128 0.78 -0.9
3,352,130 - Dsui_3128 0.80 -0.9
3,352,151 - Dsui_3128 0.81 +1.5
3,352,201 + +0.7
3,352,257 + Dsui_3128 0.85 +0.7
3,352,324 + Dsui_3128 0.88 -0.3
3,352,325 + Dsui_3128 0.88 -1.9
3,352,331 + Dsui_3128 0.88 -1.6
3,352,332 - Dsui_3128 0.88 +0.3
3,352,332 - Dsui_3128 0.88 -1.0
3,352,415 - -0.8
3,352,438 + -1.3
3,352,958 - -0.5
3,353,061 + Dsui_3130 0.79 -0.2
3,353,232 + -0.6
3,353,269 + -1.5
3,353,269 + -0.7
3,353,277 - -0.5
3,353,277 - -0.5
3,353,277 - -0.3
3,353,339 - -0.3

Or see this region's nucleotide sequence