Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2918 and Dsui_2919 are separated by 161 nucleotides Dsui_2919 and Dsui_2920 are separated by 47 nucleotides Dsui_2920 and Dsui_2921 overlap by 4 nucleotides
Dsui_2918: Dsui_2918 - hypothetical protein, at 3,119,605 to 3,120,285
_2918
Dsui_2919: Dsui_2919 - addiction module antidote protein, HigA family, at 3,120,447 to 3,120,761
_2919
Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239
_2920
Dsui_2921: Dsui_2921 - isochorismate synthase family protein, at 3,122,236 to 3,123,675
_2921
Position (kb)
3120
3121
3122
3123 Strain fitness (log2 ratio)
-2
-1
0
1 at 3119.987 kb on - strand at 3119.991 kb on + strand at 3120.110 kb on - strand at 3120.160 kb on - strand at 3120.367 kb on + strand at 3120.463 kb on + strand at 3120.465 kb on + strand at 3120.478 kb on + strand at 3120.486 kb on - strand at 3120.488 kb on + strand, within Dsui_2919 at 3120.488 kb on + strand at 3120.598 kb on + strand at 3120.598 kb on + strand, within Dsui_2919 at 3120.600 kb on + strand, within Dsui_2919 at 3120.702 kb on + strand, within Dsui_2919 at 3120.770 kb on + strand at 3120.850 kb on - strand at 3120.891 kb on + strand at 3120.891 kb on + strand at 3121.005 kb on + strand, within Dsui_2920 at 3121.024 kb on + strand, within Dsui_2920 at 3121.262 kb on - strand at 3121.267 kb on - strand at 3121.750 kb on + strand, within Dsui_2920 at 3121.842 kb on - strand at 3121.880 kb on + strand, within Dsui_2920 at 3122.074 kb on - strand at 3122.110 kb on + strand at 3122.123 kb on - strand at 3122.560 kb on + strand at 3122.593 kb on - strand at 3122.596 kb on + strand, within Dsui_2921 at 3122.615 kb on - strand at 3122.713 kb on + strand, within Dsui_2921 at 3122.716 kb on - strand, within Dsui_2921 at 3122.804 kb on - strand at 3122.908 kb on + strand at 3123.106 kb on + strand, within Dsui_2921 at 3123.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 3,119,987 - +0.7 3,119,991 + +0.7 3,120,110 - -0.3 3,120,160 - +0.7 3,120,367 + -0.3 3,120,463 + -2.1 3,120,465 + +0.7 3,120,478 + -0.3 3,120,486 - +0.7 3,120,488 + Dsui_2919 0.13 -0.3 3,120,488 + +0.7 3,120,598 + +0.7 3,120,598 + Dsui_2919 0.48 -0.3 3,120,600 + Dsui_2919 0.49 -0.3 3,120,702 + Dsui_2919 0.81 -2.1 3,120,770 + -2.1 3,120,850 - -1.3 3,120,891 + -0.7 3,120,891 + -2.3 3,121,005 + Dsui_2920 0.14 -2.3 3,121,024 + Dsui_2920 0.15 -2.1 3,121,262 - -0.3 3,121,267 - +0.7 3,121,750 + Dsui_2920 0.66 +0.7 3,121,842 - +0.7 3,121,880 + Dsui_2920 0.75 -0.8 3,122,074 - +0.7 3,122,110 + -0.8 3,122,123 - -0.8 3,122,560 + -0.8 3,122,593 - +0.7 3,122,596 + Dsui_2921 0.25 -2.1 3,122,615 - -0.3 3,122,713 + Dsui_2921 0.33 -1.4 3,122,716 - Dsui_2921 0.33 -1.3 3,122,804 - -0.3 3,122,908 + +0.7 3,123,106 + Dsui_2921 0.60 -0.6 3,123,109 - +0.7
Or see this region's nucleotide sequence