Strain Fitness in Dechlorosoma suillum PS around Dsui_2920

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2918 and Dsui_2919 are separated by 161 nucleotidesDsui_2919 and Dsui_2920 are separated by 47 nucleotidesDsui_2920 and Dsui_2921 overlap by 4 nucleotides Dsui_2918: Dsui_2918 - hypothetical protein, at 3,119,605 to 3,120,285 _2918 Dsui_2919: Dsui_2919 - addiction module antidote protein, HigA family, at 3,120,447 to 3,120,761 _2919 Dsui_2920: Dsui_2920 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 3,120,809 to 3,122,239 _2920 Dsui_2921: Dsui_2921 - isochorismate synthase family protein, at 3,122,236 to 3,123,675 _2921 Position (kb) 3120 3121 3122 3123Strain fitness (log2 ratio) -2 -1 0 1at 3119.987 kb on - strandat 3119.991 kb on + strandat 3120.110 kb on - strandat 3120.160 kb on - strandat 3120.367 kb on + strandat 3120.463 kb on + strandat 3120.465 kb on + strandat 3120.478 kb on + strandat 3120.486 kb on - strandat 3120.488 kb on + strand, within Dsui_2919at 3120.488 kb on + strandat 3120.598 kb on + strandat 3120.598 kb on + strand, within Dsui_2919at 3120.600 kb on + strand, within Dsui_2919at 3120.702 kb on + strand, within Dsui_2919at 3120.770 kb on + strandat 3120.850 kb on - strandat 3120.891 kb on + strandat 3120.891 kb on + strandat 3121.005 kb on + strand, within Dsui_2920at 3121.024 kb on + strand, within Dsui_2920at 3121.262 kb on - strandat 3121.267 kb on - strandat 3121.750 kb on + strand, within Dsui_2920at 3121.842 kb on - strandat 3121.880 kb on + strand, within Dsui_2920at 3122.074 kb on - strandat 3122.110 kb on + strandat 3122.123 kb on - strandat 3122.560 kb on + strandat 3122.593 kb on - strandat 3122.596 kb on + strand, within Dsui_2921at 3122.615 kb on - strandat 3122.713 kb on + strand, within Dsui_2921at 3122.716 kb on - strand, within Dsui_2921at 3122.804 kb on - strandat 3122.908 kb on + strandat 3123.106 kb on + strand, within Dsui_2921at 3123.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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3,119,987 - +0.7
3,119,991 + +0.7
3,120,110 - -0.3
3,120,160 - +0.7
3,120,367 + -0.3
3,120,463 + -2.1
3,120,465 + +0.7
3,120,478 + -0.3
3,120,486 - +0.7
3,120,488 + Dsui_2919 0.13 -0.3
3,120,488 + +0.7
3,120,598 + +0.7
3,120,598 + Dsui_2919 0.48 -0.3
3,120,600 + Dsui_2919 0.49 -0.3
3,120,702 + Dsui_2919 0.81 -2.1
3,120,770 + -2.1
3,120,850 - -1.3
3,120,891 + -0.7
3,120,891 + -2.3
3,121,005 + Dsui_2920 0.14 -2.3
3,121,024 + Dsui_2920 0.15 -2.1
3,121,262 - -0.3
3,121,267 - +0.7
3,121,750 + Dsui_2920 0.66 +0.7
3,121,842 - +0.7
3,121,880 + Dsui_2920 0.75 -0.8
3,122,074 - +0.7
3,122,110 + -0.8
3,122,123 - -0.8
3,122,560 + -0.8
3,122,593 - +0.7
3,122,596 + Dsui_2921 0.25 -2.1
3,122,615 - -0.3
3,122,713 + Dsui_2921 0.33 -1.4
3,122,716 - Dsui_2921 0.33 -1.3
3,122,804 - -0.3
3,122,908 + +0.7
3,123,106 + Dsui_2921 0.60 -0.6
3,123,109 - +0.7

Or see this region's nucleotide sequence