Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2893 and Dsui_2894 are separated by 103 nucleotides Dsui_2894 and Dsui_2895 overlap by 4 nucleotides Dsui_2895 and Dsui_2896 are separated by 6 nucleotides
Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172
_2893
Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444
_2894
Dsui_2895: Dsui_2895 - ABC-type uncharacterized transport system, periplasmic component, at 3,096,441 to 3,097,430
_2895
Dsui_2896: Dsui_2896 - outer membrane cobalamin receptor protein, at 3,097,437 to 3,099,677
_2896
Position (kb)
3094
3095
3096
3097 Strain fitness (log2 ratio)
-2
-1
0
1 at 3093.317 kb on + strand at 3093.358 kb on + strand at 3093.445 kb on - strand, within Dsui_2893 at 3093.631 kb on - strand, within Dsui_2893 at 3093.709 kb on - strand, within Dsui_2893 at 3093.713 kb on + strand, within Dsui_2893 at 3094.029 kb on + strand at 3094.042 kb on - strand at 3094.084 kb on - strand at 3094.105 kb on - strand at 3094.133 kb on + strand at 3094.141 kb on - strand at 3094.344 kb on + strand at 3094.421 kb on - strand at 3094.550 kb on + strand, within Dsui_2894 at 3094.595 kb on + strand at 3094.666 kb on + strand at 3094.674 kb on - strand, within Dsui_2894 at 3094.734 kb on - strand, within Dsui_2894 at 3094.800 kb on - strand, within Dsui_2894 at 3094.827 kb on - strand, within Dsui_2894 at 3094.878 kb on - strand, within Dsui_2894 at 3094.946 kb on - strand, within Dsui_2894 at 3094.952 kb on + strand at 3095.047 kb on - strand, within Dsui_2894 at 3095.094 kb on - strand, within Dsui_2894 at 3095.252 kb on - strand at 3095.252 kb on - strand, within Dsui_2894 at 3095.252 kb on - strand, within Dsui_2894 at 3095.375 kb on - strand, within Dsui_2894 at 3095.410 kb on - strand, within Dsui_2894 at 3095.518 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.535 kb on - strand, within Dsui_2894 at 3095.596 kb on - strand, within Dsui_2894 at 3095.738 kb on + strand at 3095.878 kb on + strand at 3095.896 kb on - strand, within Dsui_2894 at 3095.943 kb on + strand at 3095.945 kb on - strand, within Dsui_2894 at 3095.945 kb on - strand, within Dsui_2894 at 3096.049 kb on + strand at 3096.057 kb on - strand, within Dsui_2894 at 3096.201 kb on - strand, within Dsui_2894 at 3096.279 kb on - strand at 3096.347 kb on + strand at 3096.455 kb on - strand at 3096.460 kb on - strand at 3096.477 kb on - strand at 3096.566 kb on + strand at 3096.574 kb on - strand, within Dsui_2895 at 3096.651 kb on + strand at 3096.712 kb on - strand, within Dsui_2895 at 3096.862 kb on - strand, within Dsui_2895 at 3096.878 kb on - strand, within Dsui_2895 at 3096.964 kb on + strand, within Dsui_2895 at 3097.161 kb on + strand, within Dsui_2895 at 3097.339 kb on - strand at 3097.414 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 3,093,317 + +0.8 3,093,358 + -0.2 3,093,445 - Dsui_2893 0.52 -1.2 3,093,631 - Dsui_2893 0.64 -1.6 3,093,709 - Dsui_2893 0.69 -0.8 3,093,713 + Dsui_2893 0.70 -0.8 3,094,029 + -0.8 3,094,042 - -0.0 3,094,084 - +0.0 3,094,105 - -1.1 3,094,133 + +0.8 3,094,141 - -0.5 3,094,344 + +0.8 3,094,421 - -0.3 3,094,550 + Dsui_2894 0.13 -0.3 3,094,595 + -0.3 3,094,666 + +0.7 3,094,674 - Dsui_2894 0.18 -1.8 3,094,734 - Dsui_2894 0.21 -0.3 3,094,800 - Dsui_2894 0.24 +0.7 3,094,827 - Dsui_2894 0.25 -0.8 3,094,878 - Dsui_2894 0.28 -0.3 3,094,946 - Dsui_2894 0.31 +0.7 3,094,952 + +0.7 3,095,047 - Dsui_2894 0.36 -1.3 3,095,094 - Dsui_2894 0.38 +0.7 3,095,252 - +0.7 3,095,252 - Dsui_2894 0.45 +0.7 3,095,252 - Dsui_2894 0.45 +0.7 3,095,375 - Dsui_2894 0.51 -0.3 3,095,410 - Dsui_2894 0.52 -1.3 3,095,518 - Dsui_2894 0.57 +0.7 3,095,535 - Dsui_2894 0.58 -0.3 3,095,535 - Dsui_2894 0.58 +0.7 3,095,596 - Dsui_2894 0.61 +0.7 3,095,738 + +0.7 3,095,878 + +0.7 3,095,896 - Dsui_2894 0.75 -1.3 3,095,943 + -0.3 3,095,945 - Dsui_2894 0.77 -0.8 3,095,945 - Dsui_2894 0.77 +0.7 3,096,049 + -0.3 3,096,057 - Dsui_2894 0.82 +0.7 3,096,201 - Dsui_2894 0.89 -1.6 3,096,279 - -0.3 3,096,347 + -0.3 3,096,455 - -0.3 3,096,460 - +0.7 3,096,477 - +0.7 3,096,566 + -0.3 3,096,574 - Dsui_2895 0.13 -1.8 3,096,651 + -0.3 3,096,712 - Dsui_2895 0.27 -2.3 3,096,862 - Dsui_2895 0.43 +0.7 3,096,878 - Dsui_2895 0.44 -0.8 3,096,964 + Dsui_2895 0.53 -0.3 3,097,161 + Dsui_2895 0.73 -0.8 3,097,339 - -0.3 3,097,414 + -1.6
Or see this region's nucleotide sequence