Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2864 and Dsui_2865 overlap by 4 nucleotides Dsui_2865 and Dsui_2866 are separated by 1 nucleotides Dsui_2866 and Dsui_2867 are separated by 271 nucleotides
Dsui_2864: Dsui_2864 - signal transduction histidine kinase, at 3,055,598 to 3,058,393
_2864
Dsui_2865: Dsui_2865 - hypothetical protein, at 3,058,390 to 3,058,920
_2865
Dsui_2866: Dsui_2866 - outer membrane receptor for ferrienterochelin and colicins, at 3,058,922 to 3,060,874
_2866
Dsui_2867: Dsui_2867 - surface antigen family protein, at 3,061,146 to 3,061,844
_2867
Position (kb)
3058
3059
3060
3061 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3058.095 kb on - strand, within Dsui_2864 at 3058.121 kb on + strand at 3058.179 kb on + strand at 3058.323 kb on - strand at 3058.373 kb on - strand at 3058.399 kb on - strand at 3058.515 kb on + strand, within Dsui_2865 at 3058.548 kb on - strand, within Dsui_2865 at 3058.594 kb on + strand at 3058.644 kb on + strand at 3058.652 kb on - strand at 3058.668 kb on - strand at 3058.675 kb on + strand at 3058.718 kb on - strand, within Dsui_2865 at 3058.781 kb on - strand, within Dsui_2865 at 3058.883 kb on - strand at 3058.972 kb on + strand at 3059.010 kb on + strand at 3059.108 kb on - strand at 3059.164 kb on + strand, within Dsui_2866 at 3059.439 kb on - strand, within Dsui_2866 at 3059.439 kb on - strand, within Dsui_2866 at 3059.484 kb on - strand, within Dsui_2866 at 3059.569 kb on - strand, within Dsui_2866 at 3059.915 kb on - strand, within Dsui_2866 at 3060.050 kb on - strand, within Dsui_2866 at 3060.302 kb on - strand, within Dsui_2866 at 3060.468 kb on - strand at 3060.482 kb on - strand, within Dsui_2866 at 3060.544 kb on - strand, within Dsui_2866 at 3060.605 kb on - strand, within Dsui_2866 at 3060.605 kb on - strand, within Dsui_2866 at 3060.716 kb on - strand at 3060.797 kb on + strand at 3060.891 kb on - strand at 3061.082 kb on + strand at 3061.136 kb on + strand at 3061.424 kb on + strand, within Dsui_2867 at 3061.424 kb on + strand, within Dsui_2867 at 3061.472 kb on + strand, within Dsui_2867 at 3061.555 kb on - strand at 3061.750 kb on + strand, within Dsui_2867 at 3061.755 kb on + strand at 3061.805 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 3,058,095 - Dsui_2864 0.89 -2.7 3,058,121 + +0.8 3,058,179 + +0.8 3,058,323 - -0.8 3,058,373 - -0.2 3,058,399 - +0.8 3,058,515 + Dsui_2865 0.24 +0.8 3,058,548 - Dsui_2865 0.30 +0.8 3,058,594 + -0.2 3,058,644 + +0.8 3,058,652 - +0.8 3,058,668 - +0.8 3,058,675 + +0.8 3,058,718 - Dsui_2865 0.62 +0.8 3,058,781 - Dsui_2865 0.74 -1.2 3,058,883 - +0.8 3,058,972 + +0.8 3,059,010 + -0.8 3,059,108 - -1.2 3,059,164 + Dsui_2866 0.12 +0.8 3,059,439 - Dsui_2866 0.26 -0.8 3,059,439 - Dsui_2866 0.26 +0.8 3,059,484 - Dsui_2866 0.29 +0.8 3,059,569 - Dsui_2866 0.33 -2.5 3,059,915 - Dsui_2866 0.51 -0.2 3,060,050 - Dsui_2866 0.58 -2.2 3,060,302 - Dsui_2866 0.71 -2.2 3,060,468 - +0.8 3,060,482 - Dsui_2866 0.80 -1.8 3,060,544 - Dsui_2866 0.83 +0.8 3,060,605 - Dsui_2866 0.86 -0.2 3,060,605 - Dsui_2866 0.86 -1.5 3,060,716 - +0.8 3,060,797 + +0.8 3,060,891 - -0.2 3,061,082 + -0.2 3,061,136 + -2.8 3,061,424 + Dsui_2867 0.40 +0.8 3,061,424 + Dsui_2867 0.40 -0.2 3,061,472 + Dsui_2867 0.47 -0.2 3,061,555 - +0.8 3,061,750 + Dsui_2867 0.86 -0.2 3,061,755 + +0.8 3,061,805 + -0.8
Or see this region's nucleotide sequence