Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2806 and Dsui_2807 are separated by 130 nucleotides Dsui_2807 and Dsui_2808 are separated by 71 nucleotides Dsui_2808 and Dsui_2809 are separated by 59 nucleotides Dsui_2809 and Dsui_2810 overlap by 4 nucleotides
Dsui_2806: Dsui_2806 - PAS domain S-box, at 2,977,521 to 2,980,562
_2806
Dsui_2807: Dsui_2807 - enoyl-CoA hydratase/carnithine racemase, at 2,980,693 to 2,981,481
_2807
Dsui_2808: Dsui_2808 - acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II, at 2,981,553 to 2,983,211
_2808
Dsui_2809: Dsui_2809 - ABC-type uncharacterized transport system, auxiliary component, at 2,983,271 to 2,983,858
_2809
Dsui_2810: Dsui_2810 - ABC-type transport system involved in resistance to organic solvents, periplasmic component, at 2,983,855 to 2,984,778
_2810
Position (kb)
2981
2982
2983
2984 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2980.553 kb on - strand at 2980.782 kb on - strand, within Dsui_2807 at 2980.953 kb on - strand, within Dsui_2807 at 2980.967 kb on + strand, within Dsui_2807 at 2981.048 kb on + strand at 2981.056 kb on - strand, within Dsui_2807 at 2981.181 kb on - strand, within Dsui_2807 at 2981.227 kb on - strand, within Dsui_2807 at 2981.274 kb on + strand, within Dsui_2807 at 2981.384 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.389 kb on - strand, within Dsui_2807 at 2981.465 kb on + strand at 2981.468 kb on - strand at 2981.517 kb on - strand at 2981.550 kb on + strand at 2981.598 kb on + strand at 2981.657 kb on + strand at 2981.665 kb on - strand at 2981.665 kb on - strand at 2981.675 kb on - strand at 2981.705 kb on + strand at 2981.778 kb on + strand at 2981.894 kb on - strand, within Dsui_2808 at 2981.952 kb on + strand, within Dsui_2808 at 2981.971 kb on + strand, within Dsui_2808 at 2981.973 kb on - strand, within Dsui_2808 at 2982.129 kb on - strand, within Dsui_2808 at 2982.232 kb on + strand, within Dsui_2808 at 2982.343 kb on + strand, within Dsui_2808 at 2982.507 kb on + strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.510 kb on - strand, within Dsui_2808 at 2982.564 kb on - strand, within Dsui_2808 at 2982.700 kb on + strand at 2982.826 kb on - strand, within Dsui_2808 at 2983.054 kb on + strand at 2983.122 kb on + strand at 2983.741 kb on - strand, within Dsui_2809 at 2983.827 kb on - strand at 2983.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 2,980,553 - -0.7 2,980,782 - Dsui_2807 0.11 -0.7 2,980,953 - Dsui_2807 0.33 +0.7 2,980,967 + Dsui_2807 0.35 -0.1 2,981,048 + -0.1 2,981,056 - Dsui_2807 0.46 +0.4 2,981,181 - Dsui_2807 0.62 -3.1 2,981,227 - Dsui_2807 0.68 -1.0 2,981,274 + Dsui_2807 0.74 -0.1 2,981,384 - Dsui_2807 0.88 +0.9 2,981,389 - Dsui_2807 0.88 +0.9 2,981,389 - Dsui_2807 0.88 -2.1 2,981,465 + +0.9 2,981,468 - +0.9 2,981,517 - -0.3 2,981,550 + -2.1 2,981,598 + -1.1 2,981,657 + +0.9 2,981,665 - -0.5 2,981,665 - -0.1 2,981,675 - -1.0 2,981,705 + +0.9 2,981,778 + -0.1 2,981,894 - Dsui_2808 0.21 -0.6 2,981,952 + Dsui_2808 0.24 +0.9 2,981,971 + Dsui_2808 0.25 -0.1 2,981,973 - Dsui_2808 0.25 +2.4 2,982,129 - Dsui_2808 0.35 -0.3 2,982,232 + Dsui_2808 0.41 +0.9 2,982,343 + Dsui_2808 0.48 -0.1 2,982,507 + Dsui_2808 0.58 +0.9 2,982,510 - Dsui_2808 0.58 -0.2 2,982,510 - Dsui_2808 0.58 -0.4 2,982,510 - Dsui_2808 0.58 -0.6 2,982,564 - Dsui_2808 0.61 -0.4 2,982,700 + +0.9 2,982,826 - Dsui_2808 0.77 -0.9 2,983,054 + -0.1 2,983,122 + -0.1 2,983,741 - Dsui_2809 0.80 -0.7 2,983,827 - -0.1 2,983,861 - -0.7
Or see this region's nucleotide sequence