Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2634 and Dsui_2635 overlap by 4 nucleotides Dsui_2635 and Dsui_2636 are separated by 11 nucleotides
Dsui_2634: Dsui_2634 - cytochrome c, mono- and diheme variants family, at 2,784,698 to 2,785,084
_2634
Dsui_2635: Dsui_2635 - heavy metal efflux pump, cobalt-zinc-cadmium, at 2,785,081 to 2,788,215
_2635
Dsui_2636: Dsui_2636 - RND family efflux transporter, MFP subunit, at 2,788,227 to 2,789,816
_2636
Position (kb)
2785
2786
2787
2788
2789 Strain fitness (log2 ratio)
-2
-1
0
1 at 2784.084 kb on - strand at 2784.092 kb on + strand at 2784.100 kb on - strand at 2784.100 kb on - strand at 2784.144 kb on + strand at 2784.157 kb on - strand at 2784.159 kb on + strand at 2784.159 kb on + strand at 2784.215 kb on - strand at 2784.217 kb on - strand at 2784.359 kb on + strand at 2784.472 kb on - strand at 2784.509 kb on - strand at 2784.553 kb on - strand at 2784.711 kb on + strand at 2785.004 kb on + strand, within Dsui_2634 at 2785.010 kb on + strand, within Dsui_2634 at 2785.029 kb on - strand, within Dsui_2634 at 2785.029 kb on - strand, within Dsui_2634 at 2785.217 kb on - strand at 2785.320 kb on + strand at 2785.473 kb on + strand, within Dsui_2635 at 2785.474 kb on - strand, within Dsui_2635 at 2785.547 kb on - strand, within Dsui_2635 at 2785.588 kb on + strand, within Dsui_2635 at 2785.773 kb on - strand, within Dsui_2635 at 2785.773 kb on - strand, within Dsui_2635 at 2785.881 kb on + strand, within Dsui_2635 at 2785.984 kb on + strand, within Dsui_2635 at 2786.046 kb on - strand, within Dsui_2635 at 2786.121 kb on - strand, within Dsui_2635 at 2786.121 kb on - strand, within Dsui_2635 at 2786.175 kb on - strand, within Dsui_2635 at 2786.195 kb on - strand, within Dsui_2635 at 2786.278 kb on + strand, within Dsui_2635 at 2786.280 kb on + strand, within Dsui_2635 at 2786.408 kb on + strand, within Dsui_2635 at 2786.427 kb on - strand, within Dsui_2635 at 2786.522 kb on + strand, within Dsui_2635 at 2786.677 kb on - strand, within Dsui_2635 at 2786.677 kb on - strand, within Dsui_2635 at 2786.750 kb on - strand, within Dsui_2635 at 2786.764 kb on + strand, within Dsui_2635 at 2786.803 kb on + strand, within Dsui_2635 at 2786.811 kb on - strand, within Dsui_2635 at 2786.870 kb on + strand, within Dsui_2635 at 2786.877 kb on + strand, within Dsui_2635 at 2786.900 kb on - strand, within Dsui_2635 at 2786.905 kb on - strand, within Dsui_2635 at 2786.984 kb on - strand, within Dsui_2635 at 2787.029 kb on - strand, within Dsui_2635 at 2787.247 kb on + strand, within Dsui_2635 at 2787.247 kb on + strand, within Dsui_2635 at 2787.247 kb on + strand, within Dsui_2635 at 2787.247 kb on + strand, within Dsui_2635 at 2787.247 kb on + strand, within Dsui_2635 at 2787.255 kb on - strand, within Dsui_2635 at 2787.255 kb on - strand, within Dsui_2635 at 2787.255 kb on - strand, within Dsui_2635 at 2787.280 kb on - strand, within Dsui_2635 at 2787.397 kb on + strand, within Dsui_2635 at 2787.453 kb on + strand, within Dsui_2635 at 2787.565 kb on + strand, within Dsui_2635 at 2787.739 kb on + strand, within Dsui_2635 at 2787.767 kb on + strand, within Dsui_2635 at 2787.813 kb on - strand, within Dsui_2635 at 2787.845 kb on + strand, within Dsui_2635 at 2787.936 kb on + strand at 2787.967 kb on + strand at 2788.078 kb on - strand at 2788.250 kb on - strand at 2788.621 kb on + strand, within Dsui_2636 at 2788.707 kb on - strand, within Dsui_2636 at 2788.780 kb on + strand at 2788.936 kb on - strand, within Dsui_2636 at 2788.962 kb on + strand, within Dsui_2636 at 2788.963 kb on + strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.971 kb on - strand, within Dsui_2636 at 2788.983 kb on - strand, within Dsui_2636 at 2789.152 kb on + strand, within Dsui_2636 at 2789.160 kb on - strand, within Dsui_2636 at 2789.160 kb on - strand, within Dsui_2636
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 2,784,084 - +0.8 2,784,092 + -1.5 2,784,100 - -0.8 2,784,100 - -0.8 2,784,144 + +0.8 2,784,157 - +0.8 2,784,159 + -0.2 2,784,159 + -0.2 2,784,215 - -0.2 2,784,217 - +0.8 2,784,359 + -0.8 2,784,472 - -0.7 2,784,509 - -0.2 2,784,553 - +0.8 2,784,711 + +0.8 2,785,004 + Dsui_2634 0.79 -0.2 2,785,010 + Dsui_2634 0.81 +0.8 2,785,029 - Dsui_2634 0.86 -0.8 2,785,029 - Dsui_2634 0.86 +1.4 2,785,217 - +0.8 2,785,320 + -0.2 2,785,473 + Dsui_2635 0.13 -1.2 2,785,474 - Dsui_2635 0.13 -0.2 2,785,547 - Dsui_2635 0.15 -0.2 2,785,588 + Dsui_2635 0.16 +0.8 2,785,773 - Dsui_2635 0.22 -1.5 2,785,773 - Dsui_2635 0.22 -0.2 2,785,881 + Dsui_2635 0.26 -0.2 2,785,984 + Dsui_2635 0.29 +0.8 2,786,046 - Dsui_2635 0.31 -1.5 2,786,121 - Dsui_2635 0.33 -2.0 2,786,121 - Dsui_2635 0.33 -1.2 2,786,175 - Dsui_2635 0.35 -0.2 2,786,195 - Dsui_2635 0.36 -2.0 2,786,278 + Dsui_2635 0.38 +0.8 2,786,280 + Dsui_2635 0.38 +0.8 2,786,408 + Dsui_2635 0.42 +0.8 2,786,427 - Dsui_2635 0.43 -0.2 2,786,522 + Dsui_2635 0.46 +0.8 2,786,677 - Dsui_2635 0.51 -2.2 2,786,677 - Dsui_2635 0.51 +0.8 2,786,750 - Dsui_2635 0.53 +0.8 2,786,764 + Dsui_2635 0.54 +0.8 2,786,803 + Dsui_2635 0.55 +0.8 2,786,811 - Dsui_2635 0.55 +0.8 2,786,870 + Dsui_2635 0.57 -0.2 2,786,877 + Dsui_2635 0.57 -1.2 2,786,900 - Dsui_2635 0.58 +0.8 2,786,905 - Dsui_2635 0.58 +0.8 2,786,984 - Dsui_2635 0.61 -2.3 2,787,029 - Dsui_2635 0.62 -1.2 2,787,247 + Dsui_2635 0.69 +0.8 2,787,247 + Dsui_2635 0.69 +0.8 2,787,247 + Dsui_2635 0.69 -1.8 2,787,247 + Dsui_2635 0.69 -0.2 2,787,247 + Dsui_2635 0.69 +0.8 2,787,255 - Dsui_2635 0.69 +0.8 2,787,255 - Dsui_2635 0.69 +0.8 2,787,255 - Dsui_2635 0.69 -1.2 2,787,280 - Dsui_2635 0.70 -0.2 2,787,397 + Dsui_2635 0.74 +0.8 2,787,453 + Dsui_2635 0.76 -0.2 2,787,565 + Dsui_2635 0.79 +0.8 2,787,739 + Dsui_2635 0.85 +0.8 2,787,767 + Dsui_2635 0.86 -0.2 2,787,813 - Dsui_2635 0.87 +0.8 2,787,845 + Dsui_2635 0.88 -0.2 2,787,936 + +0.8 2,787,967 + +0.8 2,788,078 - -1.8 2,788,250 - -0.2 2,788,621 + Dsui_2636 0.25 -0.2 2,788,707 - Dsui_2636 0.30 -1.2 2,788,780 + +0.8 2,788,936 - Dsui_2636 0.45 +0.8 2,788,962 + Dsui_2636 0.46 +0.8 2,788,963 + Dsui_2636 0.46 +0.8 2,788,971 - Dsui_2636 0.47 +0.8 2,788,971 - Dsui_2636 0.47 -0.2 2,788,971 - Dsui_2636 0.47 -2.0 2,788,971 - Dsui_2636 0.47 +0.8 2,788,971 - Dsui_2636 0.47 +0.8 2,788,983 - Dsui_2636 0.48 -0.2 2,789,152 + Dsui_2636 0.58 +0.8 2,789,160 - Dsui_2636 0.59 +0.8 2,789,160 - Dsui_2636 0.59 +0.8
Or see this region's nucleotide sequence