Strain Fitness in Dechlorosoma suillum PS around Dsui_2411

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2410 and Dsui_2411 are separated by 121 nucleotidesDsui_2411 and Dsui_2412 are separated by 125 nucleotides Dsui_2410: Dsui_2410 - transcriptional regulator, at 2,561,325 to 2,562,227 _2410 Dsui_2411: Dsui_2411 - alanine racemase, at 2,562,349 to 2,563,440 _2411 Dsui_2412: Dsui_2412 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,563,566 to 2,566,304 _2412 Position (kb) 2562 2563 2564Strain fitness (log2 ratio) -2 -1 0 1 2at 2561.388 kb on + strandat 2561.396 kb on + strandat 2561.401 kb on + strandat 2561.422 kb on + strand, within Dsui_2410at 2561.519 kb on + strand, within Dsui_2410at 2561.596 kb on + strand, within Dsui_2410at 2561.649 kb on + strand, within Dsui_2410at 2561.743 kb on + strand, within Dsui_2410at 2561.743 kb on + strand, within Dsui_2410at 2561.743 kb on + strand, within Dsui_2410at 2561.748 kb on + strand, within Dsui_2410at 2561.874 kb on + strand, within Dsui_2410at 2561.923 kb on + strand, within Dsui_2410at 2561.923 kb on + strand, within Dsui_2410at 2561.923 kb on + strand, within Dsui_2410at 2561.954 kb on + strand, within Dsui_2410at 2562.011 kb on + strand, within Dsui_2410at 2562.034 kb on + strand, within Dsui_2410at 2562.054 kb on + strand, within Dsui_2410at 2562.075 kb on + strand, within Dsui_2410at 2562.107 kb on + strand, within Dsui_2410at 2562.128 kb on + strand, within Dsui_2410at 2562.220 kb on - strandat 2563.445 kb on + strandat 2563.622 kb on - strandat 2563.694 kb on + strandat 2563.923 kb on + strand, within Dsui_2412at 2564.225 kb on + strand, within Dsui_2412at 2564.281 kb on - strand, within Dsui_2412at 2564.412 kb on + strand, within Dsui_2412at 2564.415 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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2,561,388 + +0.1
2,561,396 + -0.9
2,561,401 + -1.5
2,561,422 + Dsui_2410 0.11 +0.2
2,561,519 + Dsui_2410 0.21 +0.8
2,561,596 + Dsui_2410 0.30 -0.2
2,561,649 + Dsui_2410 0.36 +0.2
2,561,743 + Dsui_2410 0.46 -0.3
2,561,743 + Dsui_2410 0.46 -0.9
2,561,743 + Dsui_2410 0.46 -2.6
2,561,748 + Dsui_2410 0.47 -0.5
2,561,874 + Dsui_2410 0.61 +0.0
2,561,923 + Dsui_2410 0.66 +0.4
2,561,923 + Dsui_2410 0.66 -0.2
2,561,923 + Dsui_2410 0.66 -1.3
2,561,954 + Dsui_2410 0.70 -1.8
2,562,011 + Dsui_2410 0.76 -0.8
2,562,034 + Dsui_2410 0.79 -0.3
2,562,054 + Dsui_2410 0.81 -1.2
2,562,075 + Dsui_2410 0.83 -2.3
2,562,107 + Dsui_2410 0.87 +2.4
2,562,128 + Dsui_2410 0.89 -0.6
2,562,220 - +0.8
2,563,445 + -0.1
2,563,622 - -1.2
2,563,694 + +0.8
2,563,923 + Dsui_2412 0.13 -1.6
2,564,225 + Dsui_2412 0.24 -2.2
2,564,281 - Dsui_2412 0.26 -0.2
2,564,412 + Dsui_2412 0.31 -1.9
2,564,415 - +0.8

Or see this region's nucleotide sequence