Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2324 and Dsui_2325 are separated by 70 nucleotides Dsui_2325 and Dsui_2326 are separated by 151 nucleotides Dsui_2326 and Dsui_2327 are separated by 90 nucleotides Dsui_2327 and Dsui_2328 are separated by 76 nucleotides Dsui_2328 and Dsui_2329 are separated by 57 nucleotides
Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868
_2324
Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343
_2325
Dsui_2326: Dsui_2326 - hypothetical protein, at 2,480,495 to 2,480,734
_2326
Dsui_2327: Dsui_2327 - putative toxin-antitoxin system toxin component, PIN family, at 2,480,825 to 2,481,295
_2327
Dsui_2328: Dsui_2328 - hypothetical protein, at 2,481,372 to 2,482,229
_2328
Dsui_2329: Dsui_2329 - putative dehydrogenase, at 2,482,287 to 2,483,414
_2329
Position (kb)
2480
2481
2482 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2479.837 kb on + strand at 2479.884 kb on - strand at 2480.024 kb on + strand at 2480.202 kb on - strand, within Dsui_2325 at 2480.207 kb on - strand, within Dsui_2325 at 2480.238 kb on - strand, within Dsui_2325 at 2480.257 kb on - strand, within Dsui_2325 at 2480.288 kb on + strand at 2480.296 kb on - strand, within Dsui_2325 at 2480.419 kb on - strand at 2480.706 kb on - strand, within Dsui_2326 at 2480.745 kb on - strand at 2481.077 kb on - strand, within Dsui_2327 at 2481.197 kb on + strand at 2481.230 kb on + strand at 2481.268 kb on - strand at 2481.447 kb on - strand at 2481.515 kb on + strand at 2481.534 kb on - strand at 2481.642 kb on + strand at 2481.783 kb on - strand at 2482.061 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 2,479,837 + -0.5 2,479,884 - +1.3 2,480,024 + +0.8 2,480,202 - Dsui_2325 0.65 +0.3 2,480,207 - Dsui_2325 0.66 -2.6 2,480,238 - Dsui_2325 0.74 +0.8 2,480,257 - Dsui_2325 0.79 +0.8 2,480,288 + -0.2 2,480,296 - Dsui_2325 0.88 -1.7 2,480,419 - -1.5 2,480,706 - Dsui_2326 0.88 -0.3 2,480,745 - +0.2 2,481,077 - Dsui_2327 0.54 -2.8 2,481,197 + +0.9 2,481,230 + +0.9 2,481,268 - -1.7 2,481,447 - +0.9 2,481,515 + +0.9 2,481,534 - -0.1 2,481,642 + -0.1 2,481,783 - -1.5 2,482,061 - +0.9
Or see this region's nucleotide sequence