Strain Fitness in Dechlorosoma suillum PS around Dsui_2327

Experiment: ALP with sodium fluoride 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2324 and Dsui_2325 are separated by 70 nucleotidesDsui_2325 and Dsui_2326 are separated by 151 nucleotidesDsui_2326 and Dsui_2327 are separated by 90 nucleotidesDsui_2327 and Dsui_2328 are separated by 76 nucleotidesDsui_2328 and Dsui_2329 are separated by 57 nucleotides Dsui_2324: Dsui_2324 - hypothetical protein, at 2,479,500 to 2,479,868 _2324 Dsui_2325: Dsui_2325 - hypothetical protein, at 2,479,939 to 2,480,343 _2325 Dsui_2326: Dsui_2326 - hypothetical protein, at 2,480,495 to 2,480,734 _2326 Dsui_2327: Dsui_2327 - putative toxin-antitoxin system toxin component, PIN family, at 2,480,825 to 2,481,295 _2327 Dsui_2328: Dsui_2328 - hypothetical protein, at 2,481,372 to 2,482,229 _2328 Dsui_2329: Dsui_2329 - putative dehydrogenase, at 2,482,287 to 2,483,414 _2329 Position (kb) 2480 2481 2482Strain fitness (log2 ratio) -3 -2 -1 0 1at 2479.837 kb on + strandat 2479.884 kb on - strandat 2480.024 kb on + strandat 2480.202 kb on - strand, within Dsui_2325at 2480.207 kb on - strand, within Dsui_2325at 2480.238 kb on - strand, within Dsui_2325at 2480.257 kb on - strand, within Dsui_2325at 2480.288 kb on + strandat 2480.296 kb on - strand, within Dsui_2325at 2480.419 kb on - strandat 2480.706 kb on - strand, within Dsui_2326at 2480.745 kb on - strandat 2481.077 kb on - strand, within Dsui_2327at 2481.197 kb on + strandat 2481.230 kb on + strandat 2481.268 kb on - strandat 2481.447 kb on - strandat 2481.515 kb on + strandat 2481.534 kb on - strandat 2481.642 kb on + strandat 2481.783 kb on - strandat 2482.061 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
remove
2,479,837 + -0.5
2,479,884 - +1.3
2,480,024 + +0.8
2,480,202 - Dsui_2325 0.65 +0.3
2,480,207 - Dsui_2325 0.66 -2.6
2,480,238 - Dsui_2325 0.74 +0.8
2,480,257 - Dsui_2325 0.79 +0.8
2,480,288 + -0.2
2,480,296 - Dsui_2325 0.88 -1.7
2,480,419 - -1.5
2,480,706 - Dsui_2326 0.88 -0.3
2,480,745 - +0.2
2,481,077 - Dsui_2327 0.54 -2.8
2,481,197 + +0.9
2,481,230 + +0.9
2,481,268 - -1.7
2,481,447 - +0.9
2,481,515 + +0.9
2,481,534 - -0.1
2,481,642 + -0.1
2,481,783 - -1.5
2,482,061 - +0.9

Or see this region's nucleotide sequence