Strain Fitness in Dechlorosoma suillum PS around Dsui_2239

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2238 and Dsui_2239 are separated by 459 nucleotidesDsui_2239 and Dsui_2240 are separated by 161 nucleotides Dsui_2238: Dsui_2238 - ABC-type dipeptide transport system, periplasmic component, at 2,381,177 to 2,382,739 _2238 Dsui_2239: Dsui_2239 - tRNA (uracil-5-)-methyltransferase, at 2,383,199 to 2,384,287 _2239 Dsui_2240: Dsui_2240 - PAS domain S-box, at 2,384,449 to 2,388,288 _2240 Position (kb) 2383 2384 2385Strain fitness (log2 ratio) -1 0 1at 2382.327 kb on + strand, within Dsui_2238at 2382.382 kb on + strandat 2382.412 kb on + strand, within Dsui_2238at 2382.527 kb on - strandat 2382.531 kb on - strand, within Dsui_2238at 2382.562 kb on + strandat 2382.782 kb on - strandat 2382.936 kb on + strandat 2383.038 kb on - strandat 2383.038 kb on - strandat 2383.038 kb on - strandat 2383.157 kb on - strandat 2383.221 kb on - strandat 2383.350 kb on - strand, within Dsui_2239at 2383.356 kb on - strand, within Dsui_2239at 2383.373 kb on - strand, within Dsui_2239at 2383.475 kb on + strandat 2383.483 kb on - strand, within Dsui_2239at 2383.483 kb on - strand, within Dsui_2239at 2383.483 kb on - strand, within Dsui_2239at 2383.515 kb on + strandat 2383.523 kb on - strand, within Dsui_2239at 2383.788 kb on - strand, within Dsui_2239at 2383.801 kb on + strandat 2383.977 kb on + strandat 2384.133 kb on + strandat 2384.365 kb on + strandat 2384.447 kb on + strandat 2384.525 kb on + strandat 2384.532 kb on - strandat 2384.533 kb on - strandat 2384.561 kb on + strandat 2384.637 kb on - strandat 2384.701 kb on + strandat 2384.775 kb on + strandat 2385.067 kb on - strandat 2385.240 kb on - strandat 2385.263 kb on + strandat 2385.277 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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2,382,327 + Dsui_2238 0.74 -1.4
2,382,382 + +0.9
2,382,412 + Dsui_2238 0.79 -0.1
2,382,527 - +0.9
2,382,531 - Dsui_2238 0.87 -0.1
2,382,562 + +0.9
2,382,782 - -0.1
2,382,936 + -0.1
2,383,038 - -1.1
2,383,038 - -1.1
2,383,038 - +0.9
2,383,157 - -1.1
2,383,221 - -0.9
2,383,350 - Dsui_2239 0.14 +0.0
2,383,356 - Dsui_2239 0.14 -0.6
2,383,373 - Dsui_2239 0.16 -0.5
2,383,475 + +0.9
2,383,483 - Dsui_2239 0.26 -1.6
2,383,483 - Dsui_2239 0.26 -0.0
2,383,483 - Dsui_2239 0.26 -0.2
2,383,515 + +0.9
2,383,523 - Dsui_2239 0.30 +0.8
2,383,788 - Dsui_2239 0.54 -0.9
2,383,801 + -0.1
2,383,977 + +0.9
2,384,133 + -0.1
2,384,365 + +0.9
2,384,447 + -0.1
2,384,525 + +0.9
2,384,532 - -1.1
2,384,533 - -0.1
2,384,561 + -0.1
2,384,637 - -0.1
2,384,701 + +0.9
2,384,775 + +0.9
2,385,067 - -0.6
2,385,240 - +0.9
2,385,263 + -0.6
2,385,277 + -0.1

Or see this region's nucleotide sequence