Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2236 and Dsui_2237 overlap by 4 nucleotides Dsui_2237 and Dsui_2238 are separated by 47 nucleotides
Dsui_2236: Dsui_2236 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,379,178 to 2,380,164
_2236
Dsui_2237: Dsui_2237 - ABC-type dipeptide/oligopeptide/nickel transport system, permease component, at 2,380,161 to 2,381,129
_2237
Dsui_2238: Dsui_2238 - ABC-type dipeptide transport system, periplasmic component, at 2,381,177 to 2,382,739
_2238
Position (kb)
2380
2381
2382 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2379.207 kb on - strand at 2379.253 kb on + strand at 2379.253 kb on + strand at 2379.261 kb on - strand at 2379.262 kb on - strand at 2379.264 kb on + strand at 2379.274 kb on - strand at 2379.284 kb on - strand, within Dsui_2236 at 2379.289 kb on - strand, within Dsui_2236 at 2379.343 kb on - strand at 2379.373 kb on + strand at 2379.658 kb on + strand at 2379.821 kb on + strand at 2379.854 kb on - strand at 2379.970 kb on + strand at 2380.082 kb on - strand at 2380.192 kb on + strand at 2380.198 kb on + strand at 2380.206 kb on - strand at 2380.316 kb on + strand, within Dsui_2237 at 2380.334 kb on - strand, within Dsui_2237 at 2380.421 kb on - strand, within Dsui_2237 at 2380.441 kb on - strand, within Dsui_2237 at 2380.479 kb on + strand at 2380.493 kb on - strand, within Dsui_2237 at 2380.520 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.542 kb on - strand, within Dsui_2237 at 2380.552 kb on - strand at 2380.677 kb on - strand, within Dsui_2237 at 2380.724 kb on + strand at 2380.810 kb on + strand at 2380.835 kb on + strand, within Dsui_2237 at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.835 kb on + strand at 2380.854 kb on - strand, within Dsui_2237 at 2380.944 kb on - strand, within Dsui_2237 at 2380.962 kb on + strand at 2381.156 kb on - strand at 2381.191 kb on - strand at 2381.301 kb on + strand at 2381.309 kb on - strand at 2381.408 kb on + strand, within Dsui_2238 at 2381.461 kb on + strand at 2381.487 kb on + strand at 2381.545 kb on + strand, within Dsui_2238 at 2381.564 kb on + strand at 2381.564 kb on + strand at 2381.643 kb on - strand, within Dsui_2238 at 2381.664 kb on - strand at 2381.665 kb on + strand at 2381.782 kb on + strand at 2381.937 kb on + strand at 2382.002 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 2,379,207 - -0.6 2,379,253 + -1.6 2,379,253 + +0.9 2,379,261 - -1.9 2,379,262 - -0.6 2,379,264 + -1.1 2,379,274 - -0.6 2,379,284 - Dsui_2236 0.11 -0.1 2,379,289 - Dsui_2236 0.11 -0.6 2,379,343 - +0.9 2,379,373 + +0.9 2,379,658 + +0.9 2,379,821 + +0.9 2,379,854 - +0.9 2,379,970 + -0.1 2,380,082 - +0.9 2,380,192 + +0.9 2,380,198 + -0.1 2,380,206 - -1.9 2,380,316 + Dsui_2237 0.16 +0.9 2,380,334 - Dsui_2237 0.18 -1.4 2,380,421 - Dsui_2237 0.27 -1.7 2,380,441 - Dsui_2237 0.29 -2.5 2,380,479 + -0.1 2,380,493 - Dsui_2237 0.34 -0.1 2,380,520 - Dsui_2237 0.37 -1.4 2,380,542 - Dsui_2237 0.39 -1.5 2,380,542 - Dsui_2237 0.39 +0.9 2,380,542 - Dsui_2237 0.39 -2.1 2,380,552 - +0.9 2,380,677 - Dsui_2237 0.53 +0.9 2,380,724 + -0.7 2,380,810 + -0.1 2,380,835 + Dsui_2237 0.70 -1.9 2,380,835 + +0.9 2,380,835 + -0.1 2,380,835 + +0.9 2,380,854 - Dsui_2237 0.72 +0.9 2,380,944 - Dsui_2237 0.81 +1.9 2,380,962 + -0.7 2,381,156 - -0.4 2,381,191 - -0.1 2,381,301 + +0.9 2,381,309 - +1.5 2,381,408 + Dsui_2238 0.15 -2.2 2,381,461 + -0.1 2,381,487 + +0.9 2,381,545 + Dsui_2238 0.24 -1.4 2,381,564 + -0.1 2,381,564 + -0.7 2,381,643 - Dsui_2238 0.30 -2.8 2,381,664 - +0.9 2,381,665 + -0.7 2,381,782 + -0.1 2,381,937 + +0.9 2,382,002 + +0.9
Or see this region's nucleotide sequence