Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1877 and Dsui_1878 are separated by 69 nucleotides Dsui_1878 and Dsui_1879 overlap by 4 nucleotides
Dsui_1877: Dsui_1877 - NADH:flavin oxidoreductase, at 1,974,447 to 1,975,529
_1877
Dsui_1878: Dsui_1878 - DMT(drug/metabolite transporter) superfamily permease, at 1,975,599 to 1,976,528
_1878
Dsui_1879: Dsui_1879 - luciferase family oxidoreductase, group 1, at 1,976,525 to 1,977,526
_1879
Position (kb) 1975
1976
1977 Strain fitness (log2 ratio) -2
-1
0
1 at 1974.606 kb on + strand, within Dsui_1877 at 1974.611 kb on + strand, within Dsui_1877 at 1974.633 kb on + strand at 1974.660 kb on - strand at 1974.792 kb on + strand at 1974.800 kb on + strand, within Dsui_1877 at 1974.929 kb on - strand, within Dsui_1877 at 1975.152 kb on + strand, within Dsui_1877 at 1975.262 kb on + strand, within Dsui_1877 at 1975.425 kb on - strand at 1975.499 kb on + strand at 1975.518 kb on + strand at 1975.521 kb on - strand at 1975.523 kb on + strand at 1975.523 kb on + strand at 1975.531 kb on - strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.536 kb on + strand at 1975.654 kb on + strand at 1975.666 kb on + strand at 1975.666 kb on + strand at 1975.674 kb on - strand at 1975.808 kb on - strand, within Dsui_1878 at 1975.818 kb on + strand, within Dsui_1878 at 1975.855 kb on + strand, within Dsui_1878 at 1975.858 kb on + strand, within Dsui_1878 at 1975.865 kb on + strand, within Dsui_1878 at 1975.865 kb on + strand at 1975.865 kb on + strand, within Dsui_1878 at 1975.880 kb on + strand, within Dsui_1878 at 1975.929 kb on - strand, within Dsui_1878 at 1975.932 kb on + strand, within Dsui_1878 at 1975.944 kb on - strand at 1976.083 kb on - strand, within Dsui_1878 at 1976.099 kb on + strand, within Dsui_1878 at 1976.175 kb on + strand, within Dsui_1878 at 1976.185 kb on + strand at 1976.278 kb on + strand at 1976.310 kb on + strand, within Dsui_1878 at 1976.372 kb on - strand, within Dsui_1878 at 1976.426 kb on + strand at 1976.437 kb on + strand at 1976.450 kb on - strand at 1976.547 kb on + strand at 1976.550 kb on + strand at 1976.550 kb on - strand at 1976.600 kb on + strand at 1976.607 kb on - strand at 1976.607 kb on - strand at 1976.682 kb on - strand, within Dsui_1879 at 1976.790 kb on + strand, within Dsui_1879 at 1976.852 kb on + strand at 1976.931 kb on - strand, within Dsui_1879 at 1977.039 kb on + strand, within Dsui_1879 at 1977.142 kb on - strand at 1977.162 kb on + strand, within Dsui_1879 at 1977.200 kb on + strand, within Dsui_1879 at 1977.262 kb on + strand, within Dsui_1879 at 1977.328 kb on + strand at 1977.329 kb on + strand, within Dsui_1879 at 1977.492 kb on + strand at 1977.519 kb on - strand at 1977.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 1,974,606 + Dsui_1877 0.15 -0.0 1,974,611 + Dsui_1877 0.15 -0.6 1,974,633 + +1.0 1,974,660 - +1.0 1,974,792 + +1.0 1,974,800 + Dsui_1877 0.33 -0.6 1,974,929 - Dsui_1877 0.45 -0.6 1,975,152 + Dsui_1877 0.65 +1.0 1,975,262 + Dsui_1877 0.75 -1.6 1,975,425 - -0.6 1,975,499 + +1.0 1,975,518 + +1.0 1,975,521 - +1.0 1,975,523 + -1.0 1,975,523 + +1.0 1,975,531 - +1.0 1,975,536 + -0.6 1,975,536 + -0.0 1,975,536 + +1.0 1,975,536 + -0.0 1,975,654 + -0.6 1,975,666 + -0.0 1,975,666 + -1.0 1,975,674 - -0.0 1,975,808 - Dsui_1878 0.22 +1.0 1,975,818 + Dsui_1878 0.24 -0.0 1,975,855 + Dsui_1878 0.28 -1.6 1,975,858 + Dsui_1878 0.28 -0.0 1,975,865 + Dsui_1878 0.29 -1.6 1,975,865 + +1.0 1,975,865 + Dsui_1878 0.29 -0.0 1,975,880 + Dsui_1878 0.30 -0.0 1,975,929 - Dsui_1878 0.35 -0.0 1,975,932 + Dsui_1878 0.36 -2.0 1,975,944 - +1.0 1,976,083 - Dsui_1878 0.52 -1.8 1,976,099 + Dsui_1878 0.54 -0.6 1,976,175 + Dsui_1878 0.62 -1.8 1,976,185 + +1.0 1,976,278 + +1.0 1,976,310 + Dsui_1878 0.76 -0.6 1,976,372 - Dsui_1878 0.83 -0.0 1,976,426 + +1.0 1,976,437 + -1.0 1,976,450 - +1.0 1,976,547 + -1.0 1,976,550 + -0.0 1,976,550 - -0.0 1,976,600 + -0.0 1,976,607 - -0.6 1,976,607 - -0.6 1,976,682 - Dsui_1879 0.16 -2.2 1,976,790 + Dsui_1879 0.26 -0.0 1,976,852 + +1.0 1,976,931 - Dsui_1879 0.41 -0.6 1,977,039 + Dsui_1879 0.51 -0.6 1,977,142 - -0.0 1,977,162 + Dsui_1879 0.64 -0.0 1,977,200 + Dsui_1879 0.67 -1.0 1,977,262 + Dsui_1879 0.74 -0.6 1,977,328 + +1.0 1,977,329 + Dsui_1879 0.80 -2.0 1,977,492 + -0.6 1,977,519 - +1.0 1,977,522 + -0.6
Or see this region's nucleotide sequence