Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1848 and Dsui_1849 are separated by 51 nucleotides Dsui_1849 and Dsui_1850 are separated by 3 nucleotides Dsui_1850 and Dsui_1851 are separated by 319 nucleotides
Dsui_1848: Dsui_1848 - arsenical-resistance protein, at 1,943,120 to 1,944,175
_1848
Dsui_1849: Dsui_1849 - protein-tyrosine-phosphatase, at 1,944,227 to 1,944,706
_1849
Dsui_1850: Dsui_1850 - putative transcriptional regulator, at 1,944,710 to 1,945,093
_1850
Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837
_1851
Position (kb)
1944
1945
1946 Strain fitness (log2 ratio)
-2
-1
0
1 at 1943.820 kb on + strand at 1943.835 kb on - strand at 1943.974 kb on + strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1943.982 kb on - strand, within Dsui_1848 at 1944.109 kb on + strand at 1944.145 kb on - strand at 1944.203 kb on - strand at 1944.225 kb on + strand at 1944.238 kb on - strand at 1944.239 kb on - strand at 1944.261 kb on + strand at 1944.261 kb on + strand at 1944.269 kb on - strand at 1944.648 kb on - strand, within Dsui_1849 at 1944.716 kb on - strand at 1944.793 kb on - strand, within Dsui_1850 at 1944.902 kb on - strand, within Dsui_1850 at 1944.925 kb on - strand, within Dsui_1850 at 1944.941 kb on + strand, within Dsui_1850 at 1944.945 kb on - strand, within Dsui_1850 at 1944.964 kb on + strand at 1944.964 kb on + strand, within Dsui_1850 at 1944.972 kb on - strand, within Dsui_1850 at 1945.291 kb on - strand at 1945.529 kb on + strand at 1945.633 kb on + strand at 1945.640 kb on + strand at 1945.648 kb on - strand at 1945.745 kb on + strand at 1945.802 kb on + strand at 1945.922 kb on - strand, within Dsui_1851 at 1945.955 kb on + strand at 1946.037 kb on + strand at 1946.077 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 1,943,820 + -0.2 1,943,835 - -0.2 1,943,974 + Dsui_1848 0.81 +0.8 1,943,982 - Dsui_1848 0.82 -0.2 1,943,982 - Dsui_1848 0.82 -0.2 1,944,109 + -0.2 1,944,145 - +0.8 1,944,203 - -1.2 1,944,225 + -0.2 1,944,238 - +0.8 1,944,239 - -1.2 1,944,261 + +0.8 1,944,261 + +0.8 1,944,269 - +0.8 1,944,648 - Dsui_1849 0.88 +0.8 1,944,716 - +0.8 1,944,793 - Dsui_1850 0.22 -0.4 1,944,902 - Dsui_1850 0.50 +0.0 1,944,925 - Dsui_1850 0.56 -0.1 1,944,941 + Dsui_1850 0.60 -1.2 1,944,945 - Dsui_1850 0.61 -0.2 1,944,964 + +0.8 1,944,964 + Dsui_1850 0.66 +0.8 1,944,972 - Dsui_1850 0.68 -0.3 1,945,291 - -0.2 1,945,529 + +0.8 1,945,633 + -1.2 1,945,640 + -0.2 1,945,648 - +0.8 1,945,745 + +0.8 1,945,802 + +0.8 1,945,922 - Dsui_1851 0.36 -2.0 1,945,955 + +0.8 1,946,037 + +0.8 1,946,077 + -1.2
Or see this region's nucleotide sequence