Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1731 and Dsui_1732 are separated by 171 nucleotides Dsui_1732 and Dsui_1733 are separated by 12 nucleotides Dsui_1733 and Dsui_1734 are separated by 19 nucleotides Dsui_1734 and Dsui_1735 are separated by 15 nucleotides
Dsui_1731: Dsui_1731 - flagella basal body P-ring formation protein FlgA, at 1,821,077 to 1,821,796
_1731
Dsui_1732: Dsui_1732 - flagellar basal-body rod protein FlgB, at 1,821,968 to 1,822,381
_1732
Dsui_1733: Dsui_1733 - flagellar basal-body rod protein FlgC, at 1,822,394 to 1,822,798
_1733
Dsui_1734: Dsui_1734 - flagellar hook capping protein, at 1,822,818 to 1,823,507
_1734
Dsui_1735: Dsui_1735 - flagellar hook-basal body proteins, at 1,823,523 to 1,824,878
_1735
Position (kb)
1822
1823 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1821.405 kb on - strand, within Dsui_1731 at 1821.446 kb on + strand, within Dsui_1731 at 1821.475 kb on + strand, within Dsui_1731 at 1821.493 kb on - strand, within Dsui_1731 at 1821.516 kb on - strand, within Dsui_1731 at 1821.589 kb on + strand, within Dsui_1731 at 1821.614 kb on - strand, within Dsui_1731 at 1821.615 kb on - strand, within Dsui_1731 at 1821.639 kb on + strand, within Dsui_1731 at 1821.639 kb on + strand, within Dsui_1731 at 1821.639 kb on + strand, within Dsui_1731 at 1821.647 kb on - strand, within Dsui_1731 at 1821.674 kb on + strand, within Dsui_1731 at 1821.685 kb on - strand, within Dsui_1731 at 1821.697 kb on + strand, within Dsui_1731 at 1821.705 kb on - strand, within Dsui_1731 at 1821.710 kb on + strand, within Dsui_1731 at 1821.710 kb on + strand, within Dsui_1731 at 1821.712 kb on - strand, within Dsui_1731 at 1821.717 kb on - strand, within Dsui_1731 at 1821.751 kb on + strand at 1821.751 kb on + strand at 1821.751 kb on + strand at 1821.751 kb on + strand at 1821.758 kb on + strand at 1821.759 kb on - strand at 1821.759 kb on - strand at 1821.759 kb on - strand at 1821.759 kb on - strand at 1821.759 kb on - strand at 1821.759 kb on - strand at 1821.763 kb on + strand at 1821.777 kb on - strand at 1821.794 kb on - strand at 1821.829 kb on + strand at 1821.856 kb on + strand at 1821.864 kb on - strand at 1821.901 kb on + strand at 1821.973 kb on - strand at 1822.011 kb on + strand, within Dsui_1732 at 1822.012 kb on - strand, within Dsui_1732 at 1822.034 kb on - strand, within Dsui_1732 at 1822.037 kb on + strand, within Dsui_1732 at 1822.105 kb on - strand, within Dsui_1732 at 1822.105 kb on - strand, within Dsui_1732 at 1822.105 kb on - strand, within Dsui_1732 at 1822.110 kb on - strand, within Dsui_1732 at 1822.130 kb on + strand, within Dsui_1732 at 1822.131 kb on + strand, within Dsui_1732 at 1822.139 kb on - strand, within Dsui_1732 at 1822.143 kb on - strand, within Dsui_1732 at 1822.156 kb on + strand, within Dsui_1732 at 1822.194 kb on + strand, within Dsui_1732 at 1822.208 kb on + strand, within Dsui_1732 at 1822.216 kb on - strand, within Dsui_1732 at 1822.221 kb on - strand, within Dsui_1732 at 1822.234 kb on + strand, within Dsui_1732 at 1822.234 kb on + strand, within Dsui_1732 at 1822.234 kb on + strand, within Dsui_1732 at 1822.254 kb on - strand, within Dsui_1732 at 1822.306 kb on - strand, within Dsui_1732 at 1822.306 kb on - strand, within Dsui_1732 at 1822.313 kb on + strand, within Dsui_1732 at 1822.344 kb on - strand at 1822.344 kb on - strand at 1822.372 kb on - strand at 1822.378 kb on + strand at 1822.491 kb on + strand, within Dsui_1733 at 1822.491 kb on + strand, within Dsui_1733 at 1822.491 kb on + strand, within Dsui_1733 at 1822.500 kb on - strand, within Dsui_1733 at 1822.557 kb on + strand, within Dsui_1733 at 1822.602 kb on + strand, within Dsui_1733 at 1822.610 kb on - strand, within Dsui_1733 at 1822.620 kb on - strand at 1822.657 kb on + strand, within Dsui_1733 at 1822.677 kb on + strand, within Dsui_1733 at 1822.677 kb on + strand, within Dsui_1733 at 1822.686 kb on + strand, within Dsui_1733 at 1822.694 kb on - strand at 1822.735 kb on - strand, within Dsui_1733 at 1822.787 kb on - strand at 1822.856 kb on + strand at 1822.857 kb on + strand at 1822.864 kb on + strand at 1822.864 kb on - strand at 1822.937 kb on + strand, within Dsui_1734 at 1823.024 kb on + strand, within Dsui_1734 at 1823.032 kb on - strand, within Dsui_1734 at 1823.032 kb on - strand, within Dsui_1734 at 1823.056 kb on + strand, within Dsui_1734 at 1823.108 kb on + strand, within Dsui_1734 at 1823.212 kb on + strand, within Dsui_1734 at 1823.242 kb on + strand, within Dsui_1734 at 1823.259 kb on + strand, within Dsui_1734 at 1823.261 kb on + strand, within Dsui_1734 at 1823.267 kb on - strand, within Dsui_1734 at 1823.269 kb on - strand at 1823.318 kb on + strand, within Dsui_1734 at 1823.336 kb on - strand, within Dsui_1734 at 1823.348 kb on - strand, within Dsui_1734 at 1823.353 kb on - strand, within Dsui_1734 at 1823.356 kb on + strand, within Dsui_1734 at 1823.364 kb on - strand, within Dsui_1734 at 1823.429 kb on - strand at 1823.443 kb on + strand at 1823.516 kb on - strand at 1823.538 kb on + strand at 1823.549 kb on + strand at 1823.568 kb on + strand at 1823.568 kb on + strand at 1823.600 kb on + strand at 1823.600 kb on + strand at 1823.608 kb on - strand at 1823.608 kb on - strand at 1823.659 kb on + strand, within Dsui_1735 at 1823.727 kb on + strand, within Dsui_1735 at 1823.752 kb on + strand, within Dsui_1735 at 1823.752 kb on + strand, within Dsui_1735 at 1823.757 kb on + strand, within Dsui_1735 at 1823.794 kb on + strand, within Dsui_1735
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 1,821,405 - Dsui_1731 0.46 -0.3 1,821,446 + Dsui_1731 0.51 -1.5 1,821,475 + Dsui_1731 0.55 -1.8 1,821,493 - Dsui_1731 0.58 -0.3 1,821,516 - Dsui_1731 0.61 -0.4 1,821,589 + Dsui_1731 0.71 -1.2 1,821,614 - Dsui_1731 0.75 -0.3 1,821,615 - Dsui_1731 0.75 -0.7 1,821,639 + Dsui_1731 0.78 +0.8 1,821,639 + Dsui_1731 0.78 +0.8 1,821,639 + Dsui_1731 0.78 -0.8 1,821,647 - Dsui_1731 0.79 -0.3 1,821,674 + Dsui_1731 0.83 +0.8 1,821,685 - Dsui_1731 0.84 -0.1 1,821,697 + Dsui_1731 0.86 +0.8 1,821,705 - Dsui_1731 0.87 -0.3 1,821,710 + Dsui_1731 0.88 +0.8 1,821,710 + Dsui_1731 0.88 -0.5 1,821,712 - Dsui_1731 0.88 -0.1 1,821,717 - Dsui_1731 0.89 -0.6 1,821,751 + -1.2 1,821,751 + -0.8 1,821,751 + +0.8 1,821,751 + -1.5 1,821,758 + -0.2 1,821,759 - +0.3 1,821,759 - -0.5 1,821,759 - -1.0 1,821,759 - +0.5 1,821,759 - -0.7 1,821,759 - -0.2 1,821,763 + +0.8 1,821,777 - -0.6 1,821,794 - -0.4 1,821,829 + -0.2 1,821,856 + -2.0 1,821,864 - -0.2 1,821,901 + +0.8 1,821,973 - -0.2 1,822,011 + Dsui_1732 0.10 -0.8 1,822,012 - Dsui_1732 0.11 -2.2 1,822,034 - Dsui_1732 0.16 -2.8 1,822,037 + Dsui_1732 0.17 -1.2 1,822,105 - Dsui_1732 0.33 -0.8 1,822,105 - Dsui_1732 0.33 +0.8 1,822,105 - Dsui_1732 0.33 -2.0 1,822,110 - Dsui_1732 0.34 -0.8 1,822,130 + Dsui_1732 0.39 +0.8 1,822,131 + Dsui_1732 0.39 +0.8 1,822,139 - Dsui_1732 0.41 +0.8 1,822,143 - Dsui_1732 0.42 -0.2 1,822,156 + Dsui_1732 0.45 -0.2 1,822,194 + Dsui_1732 0.55 -0.8 1,822,208 + Dsui_1732 0.58 +0.8 1,822,216 - Dsui_1732 0.60 +1.4 1,822,221 - Dsui_1732 0.61 +1.4 1,822,234 + Dsui_1732 0.64 +0.8 1,822,234 + Dsui_1732 0.64 -0.8 1,822,234 + Dsui_1732 0.64 -1.8 1,822,254 - Dsui_1732 0.69 -0.2 1,822,306 - Dsui_1732 0.82 -0.2 1,822,306 - Dsui_1732 0.82 -0.8 1,822,313 + Dsui_1732 0.83 +0.8 1,822,344 - +0.8 1,822,344 - +0.8 1,822,372 - +0.8 1,822,378 + -0.8 1,822,491 + Dsui_1733 0.24 +0.8 1,822,491 + Dsui_1733 0.24 -2.2 1,822,491 + Dsui_1733 0.24 -1.5 1,822,500 - Dsui_1733 0.26 -0.2 1,822,557 + Dsui_1733 0.40 -0.2 1,822,602 + Dsui_1733 0.51 -0.2 1,822,610 - Dsui_1733 0.53 -1.5 1,822,620 - +0.8 1,822,657 + Dsui_1733 0.65 -1.2 1,822,677 + Dsui_1733 0.70 +0.8 1,822,677 + Dsui_1733 0.70 -0.2 1,822,686 + Dsui_1733 0.72 -2.8 1,822,694 - +0.8 1,822,735 - Dsui_1733 0.84 -0.8 1,822,787 - +0.8 1,822,856 + +0.8 1,822,857 + -0.2 1,822,864 + -1.9 1,822,864 - +0.8 1,822,937 + Dsui_1734 0.17 -0.2 1,823,024 + Dsui_1734 0.30 -1.5 1,823,032 - Dsui_1734 0.31 -0.2 1,823,032 - Dsui_1734 0.31 -1.5 1,823,056 + Dsui_1734 0.34 -0.2 1,823,108 + Dsui_1734 0.42 -1.5 1,823,212 + Dsui_1734 0.57 -0.2 1,823,242 + Dsui_1734 0.61 -0.8 1,823,259 + Dsui_1734 0.64 -0.2 1,823,261 + Dsui_1734 0.64 -1.5 1,823,267 - Dsui_1734 0.65 -1.2 1,823,269 - -0.2 1,823,318 + Dsui_1734 0.72 -1.2 1,823,336 - Dsui_1734 0.75 -0.2 1,823,348 - Dsui_1734 0.77 +0.8 1,823,353 - Dsui_1734 0.78 -0.8 1,823,356 + Dsui_1734 0.78 +0.8 1,823,364 - Dsui_1734 0.79 -0.8 1,823,429 - +0.8 1,823,443 + +0.8 1,823,516 - -0.2 1,823,538 + -1.5 1,823,549 + -1.2 1,823,568 + -0.3 1,823,568 + +0.8 1,823,600 + -1.2 1,823,600 + -0.8 1,823,608 - +0.8 1,823,608 - +0.8 1,823,659 + Dsui_1735 0.10 -1.5 1,823,727 + Dsui_1735 0.15 -1.2 1,823,752 + Dsui_1735 0.17 +0.2 1,823,752 + Dsui_1735 0.17 +0.8 1,823,757 + Dsui_1735 0.17 -0.8 1,823,794 + Dsui_1735 0.20 -0.8
Or see this region's nucleotide sequence