Strain Fitness in Dechlorosoma suillum PS around Dsui_1733

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1731 and Dsui_1732 are separated by 171 nucleotidesDsui_1732 and Dsui_1733 are separated by 12 nucleotidesDsui_1733 and Dsui_1734 are separated by 19 nucleotidesDsui_1734 and Dsui_1735 are separated by 15 nucleotides Dsui_1731: Dsui_1731 - flagella basal body P-ring formation protein FlgA, at 1,821,077 to 1,821,796 _1731 Dsui_1732: Dsui_1732 - flagellar basal-body rod protein FlgB, at 1,821,968 to 1,822,381 _1732 Dsui_1733: Dsui_1733 - flagellar basal-body rod protein FlgC, at 1,822,394 to 1,822,798 _1733 Dsui_1734: Dsui_1734 - flagellar hook capping protein, at 1,822,818 to 1,823,507 _1734 Dsui_1735: Dsui_1735 - flagellar hook-basal body proteins, at 1,823,523 to 1,824,878 _1735 Position (kb) 1822 1823Strain fitness (log2 ratio) -3 -2 -1 0 1at 1821.405 kb on - strand, within Dsui_1731at 1821.446 kb on + strand, within Dsui_1731at 1821.475 kb on + strand, within Dsui_1731at 1821.493 kb on - strand, within Dsui_1731at 1821.516 kb on - strand, within Dsui_1731at 1821.589 kb on + strand, within Dsui_1731at 1821.614 kb on - strand, within Dsui_1731at 1821.615 kb on - strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.639 kb on + strand, within Dsui_1731at 1821.647 kb on - strand, within Dsui_1731at 1821.674 kb on + strand, within Dsui_1731at 1821.685 kb on - strand, within Dsui_1731at 1821.697 kb on + strand, within Dsui_1731at 1821.705 kb on - strand, within Dsui_1731at 1821.710 kb on + strand, within Dsui_1731at 1821.710 kb on + strand, within Dsui_1731at 1821.712 kb on - strand, within Dsui_1731at 1821.717 kb on - strand, within Dsui_1731at 1821.751 kb on + strandat 1821.751 kb on + strandat 1821.751 kb on + strandat 1821.751 kb on + strandat 1821.758 kb on + strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.759 kb on - strandat 1821.763 kb on + strandat 1821.777 kb on - strandat 1821.794 kb on - strandat 1821.829 kb on + strandat 1821.856 kb on + strandat 1821.864 kb on - strandat 1821.901 kb on + strandat 1821.973 kb on - strandat 1822.011 kb on + strand, within Dsui_1732at 1822.012 kb on - strand, within Dsui_1732at 1822.034 kb on - strand, within Dsui_1732at 1822.037 kb on + strand, within Dsui_1732at 1822.105 kb on - strand, within Dsui_1732at 1822.105 kb on - strand, within Dsui_1732at 1822.105 kb on - strand, within Dsui_1732at 1822.110 kb on - strand, within Dsui_1732at 1822.130 kb on + strand, within Dsui_1732at 1822.131 kb on + strand, within Dsui_1732at 1822.139 kb on - strand, within Dsui_1732at 1822.143 kb on - strand, within Dsui_1732at 1822.156 kb on + strand, within Dsui_1732at 1822.194 kb on + strand, within Dsui_1732at 1822.208 kb on + strand, within Dsui_1732at 1822.216 kb on - strand, within Dsui_1732at 1822.221 kb on - strand, within Dsui_1732at 1822.234 kb on + strand, within Dsui_1732at 1822.234 kb on + strand, within Dsui_1732at 1822.234 kb on + strand, within Dsui_1732at 1822.254 kb on - strand, within Dsui_1732at 1822.306 kb on - strand, within Dsui_1732at 1822.306 kb on - strand, within Dsui_1732at 1822.313 kb on + strand, within Dsui_1732at 1822.344 kb on - strandat 1822.344 kb on - strandat 1822.372 kb on - strandat 1822.378 kb on + strandat 1822.491 kb on + strand, within Dsui_1733at 1822.491 kb on + strand, within Dsui_1733at 1822.491 kb on + strand, within Dsui_1733at 1822.500 kb on - strand, within Dsui_1733at 1822.557 kb on + strand, within Dsui_1733at 1822.602 kb on + strand, within Dsui_1733at 1822.610 kb on - strand, within Dsui_1733at 1822.620 kb on - strandat 1822.657 kb on + strand, within Dsui_1733at 1822.677 kb on + strand, within Dsui_1733at 1822.677 kb on + strand, within Dsui_1733at 1822.686 kb on + strand, within Dsui_1733at 1822.694 kb on - strandat 1822.735 kb on - strand, within Dsui_1733at 1822.787 kb on - strandat 1822.856 kb on + strandat 1822.857 kb on + strandat 1822.864 kb on + strandat 1822.864 kb on - strandat 1822.937 kb on + strand, within Dsui_1734at 1823.024 kb on + strand, within Dsui_1734at 1823.032 kb on - strand, within Dsui_1734at 1823.032 kb on - strand, within Dsui_1734at 1823.056 kb on + strand, within Dsui_1734at 1823.108 kb on + strand, within Dsui_1734at 1823.212 kb on + strand, within Dsui_1734at 1823.242 kb on + strand, within Dsui_1734at 1823.259 kb on + strand, within Dsui_1734at 1823.261 kb on + strand, within Dsui_1734at 1823.267 kb on - strand, within Dsui_1734at 1823.269 kb on - strandat 1823.318 kb on + strand, within Dsui_1734at 1823.336 kb on - strand, within Dsui_1734at 1823.348 kb on - strand, within Dsui_1734at 1823.353 kb on - strand, within Dsui_1734at 1823.356 kb on + strand, within Dsui_1734at 1823.364 kb on - strand, within Dsui_1734at 1823.429 kb on - strandat 1823.443 kb on + strandat 1823.516 kb on - strandat 1823.538 kb on + strandat 1823.549 kb on + strandat 1823.568 kb on + strandat 1823.568 kb on + strandat 1823.600 kb on + strandat 1823.600 kb on + strandat 1823.608 kb on - strandat 1823.608 kb on - strandat 1823.659 kb on + strand, within Dsui_1735at 1823.727 kb on + strand, within Dsui_1735at 1823.752 kb on + strand, within Dsui_1735at 1823.752 kb on + strand, within Dsui_1735at 1823.757 kb on + strand, within Dsui_1735at 1823.794 kb on + strand, within Dsui_1735

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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1,821,405 - Dsui_1731 0.46 -0.3
1,821,446 + Dsui_1731 0.51 -1.5
1,821,475 + Dsui_1731 0.55 -1.8
1,821,493 - Dsui_1731 0.58 -0.3
1,821,516 - Dsui_1731 0.61 -0.4
1,821,589 + Dsui_1731 0.71 -1.2
1,821,614 - Dsui_1731 0.75 -0.3
1,821,615 - Dsui_1731 0.75 -0.7
1,821,639 + Dsui_1731 0.78 +0.8
1,821,639 + Dsui_1731 0.78 +0.8
1,821,639 + Dsui_1731 0.78 -0.8
1,821,647 - Dsui_1731 0.79 -0.3
1,821,674 + Dsui_1731 0.83 +0.8
1,821,685 - Dsui_1731 0.84 -0.1
1,821,697 + Dsui_1731 0.86 +0.8
1,821,705 - Dsui_1731 0.87 -0.3
1,821,710 + Dsui_1731 0.88 +0.8
1,821,710 + Dsui_1731 0.88 -0.5
1,821,712 - Dsui_1731 0.88 -0.1
1,821,717 - Dsui_1731 0.89 -0.6
1,821,751 + -1.2
1,821,751 + -0.8
1,821,751 + +0.8
1,821,751 + -1.5
1,821,758 + -0.2
1,821,759 - +0.3
1,821,759 - -0.5
1,821,759 - -1.0
1,821,759 - +0.5
1,821,759 - -0.7
1,821,759 - -0.2
1,821,763 + +0.8
1,821,777 - -0.6
1,821,794 - -0.4
1,821,829 + -0.2
1,821,856 + -2.0
1,821,864 - -0.2
1,821,901 + +0.8
1,821,973 - -0.2
1,822,011 + Dsui_1732 0.10 -0.8
1,822,012 - Dsui_1732 0.11 -2.2
1,822,034 - Dsui_1732 0.16 -2.8
1,822,037 + Dsui_1732 0.17 -1.2
1,822,105 - Dsui_1732 0.33 -0.8
1,822,105 - Dsui_1732 0.33 +0.8
1,822,105 - Dsui_1732 0.33 -2.0
1,822,110 - Dsui_1732 0.34 -0.8
1,822,130 + Dsui_1732 0.39 +0.8
1,822,131 + Dsui_1732 0.39 +0.8
1,822,139 - Dsui_1732 0.41 +0.8
1,822,143 - Dsui_1732 0.42 -0.2
1,822,156 + Dsui_1732 0.45 -0.2
1,822,194 + Dsui_1732 0.55 -0.8
1,822,208 + Dsui_1732 0.58 +0.8
1,822,216 - Dsui_1732 0.60 +1.4
1,822,221 - Dsui_1732 0.61 +1.4
1,822,234 + Dsui_1732 0.64 +0.8
1,822,234 + Dsui_1732 0.64 -0.8
1,822,234 + Dsui_1732 0.64 -1.8
1,822,254 - Dsui_1732 0.69 -0.2
1,822,306 - Dsui_1732 0.82 -0.2
1,822,306 - Dsui_1732 0.82 -0.8
1,822,313 + Dsui_1732 0.83 +0.8
1,822,344 - +0.8
1,822,344 - +0.8
1,822,372 - +0.8
1,822,378 + -0.8
1,822,491 + Dsui_1733 0.24 +0.8
1,822,491 + Dsui_1733 0.24 -2.2
1,822,491 + Dsui_1733 0.24 -1.5
1,822,500 - Dsui_1733 0.26 -0.2
1,822,557 + Dsui_1733 0.40 -0.2
1,822,602 + Dsui_1733 0.51 -0.2
1,822,610 - Dsui_1733 0.53 -1.5
1,822,620 - +0.8
1,822,657 + Dsui_1733 0.65 -1.2
1,822,677 + Dsui_1733 0.70 +0.8
1,822,677 + Dsui_1733 0.70 -0.2
1,822,686 + Dsui_1733 0.72 -2.8
1,822,694 - +0.8
1,822,735 - Dsui_1733 0.84 -0.8
1,822,787 - +0.8
1,822,856 + +0.8
1,822,857 + -0.2
1,822,864 + -1.9
1,822,864 - +0.8
1,822,937 + Dsui_1734 0.17 -0.2
1,823,024 + Dsui_1734 0.30 -1.5
1,823,032 - Dsui_1734 0.31 -0.2
1,823,032 - Dsui_1734 0.31 -1.5
1,823,056 + Dsui_1734 0.34 -0.2
1,823,108 + Dsui_1734 0.42 -1.5
1,823,212 + Dsui_1734 0.57 -0.2
1,823,242 + Dsui_1734 0.61 -0.8
1,823,259 + Dsui_1734 0.64 -0.2
1,823,261 + Dsui_1734 0.64 -1.5
1,823,267 - Dsui_1734 0.65 -1.2
1,823,269 - -0.2
1,823,318 + Dsui_1734 0.72 -1.2
1,823,336 - Dsui_1734 0.75 -0.2
1,823,348 - Dsui_1734 0.77 +0.8
1,823,353 - Dsui_1734 0.78 -0.8
1,823,356 + Dsui_1734 0.78 +0.8
1,823,364 - Dsui_1734 0.79 -0.8
1,823,429 - +0.8
1,823,443 + +0.8
1,823,516 - -0.2
1,823,538 + -1.5
1,823,549 + -1.2
1,823,568 + -0.3
1,823,568 + +0.8
1,823,600 + -1.2
1,823,600 + -0.8
1,823,608 - +0.8
1,823,608 - +0.8
1,823,659 + Dsui_1735 0.10 -1.5
1,823,727 + Dsui_1735 0.15 -1.2
1,823,752 + Dsui_1735 0.17 +0.2
1,823,752 + Dsui_1735 0.17 +0.8
1,823,757 + Dsui_1735 0.17 -0.8
1,823,794 + Dsui_1735 0.20 -0.8

Or see this region's nucleotide sequence