Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1085 and Dsui_1086 overlap by 4 nucleotides Dsui_1086 and Dsui_1087 are separated by 3 nucleotides
Dsui_1085: Dsui_1085 - TnsA endonuclease N terminal protein, at 1,120,193 to 1,121,242
_1085
Dsui_1086: Dsui_1086 - hypothetical protein, at 1,121,239 to 1,123,611
_1086
Dsui_1087: Dsui_1087 - hypothetical protein, at 1,123,615 to 1,125,114
_1087
Position (kb)
1121
1122
1123
1124 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1120.251 kb on + strand at 1120.276 kb on - strand at 1120.362 kb on + strand, within Dsui_1085 at 1120.370 kb on - strand, within Dsui_1085 at 1120.392 kb on - strand, within Dsui_1085 at 1120.422 kb on + strand, within Dsui_1085 at 1120.422 kb on + strand, within Dsui_1085 at 1120.422 kb on + strand, within Dsui_1085 at 1120.430 kb on - strand, within Dsui_1085 at 1120.430 kb on - strand, within Dsui_1085 at 1120.456 kb on + strand, within Dsui_1085 at 1120.459 kb on - strand, within Dsui_1085 at 1120.477 kb on + strand, within Dsui_1085 at 1120.497 kb on - strand, within Dsui_1085 at 1120.565 kb on - strand, within Dsui_1085 at 1120.565 kb on - strand, within Dsui_1085 at 1120.576 kb on + strand, within Dsui_1085 at 1120.620 kb on - strand, within Dsui_1085 at 1120.620 kb on - strand, within Dsui_1085 at 1120.752 kb on - strand, within Dsui_1085 at 1120.791 kb on + strand, within Dsui_1085 at 1120.791 kb on + strand, within Dsui_1085 at 1120.791 kb on + strand, within Dsui_1085 at 1120.791 kb on + strand, within Dsui_1085 at 1120.799 kb on - strand, within Dsui_1085 at 1120.831 kb on - strand, within Dsui_1085 at 1120.846 kb on + strand, within Dsui_1085 at 1120.944 kb on + strand, within Dsui_1085 at 1120.961 kb on + strand, within Dsui_1085 at 1120.981 kb on - strand, within Dsui_1085 at 1121.054 kb on + strand, within Dsui_1085 at 1121.066 kb on - strand, within Dsui_1085 at 1121.077 kb on - strand, within Dsui_1085 at 1121.100 kb on - strand, within Dsui_1085 at 1121.105 kb on - strand, within Dsui_1085 at 1121.164 kb on + strand at 1121.172 kb on - strand at 1121.172 kb on - strand at 1121.172 kb on - strand at 1121.172 kb on - strand at 1121.193 kb on + strand at 1121.195 kb on - strand at 1121.249 kb on - strand at 1121.283 kb on + strand at 1121.285 kb on + strand at 1121.285 kb on + strand at 1121.291 kb on - strand at 1121.389 kb on + strand at 1121.401 kb on + strand at 1121.409 kb on - strand at 1121.409 kb on - strand at 1121.423 kb on + strand at 1121.423 kb on + strand at 1121.426 kb on - strand at 1121.431 kb on - strand at 1121.441 kb on - strand at 1121.456 kb on - strand at 1121.500 kb on + strand, within Dsui_1086 at 1121.517 kb on + strand, within Dsui_1086 at 1121.597 kb on + strand, within Dsui_1086 at 1121.605 kb on - strand, within Dsui_1086 at 1121.605 kb on - strand, within Dsui_1086 at 1121.678 kb on + strand, within Dsui_1086 at 1121.768 kb on - strand, within Dsui_1086 at 1121.773 kb on - strand, within Dsui_1086 at 1121.781 kb on + strand, within Dsui_1086 at 1121.789 kb on - strand, within Dsui_1086 at 1121.811 kb on + strand, within Dsui_1086 at 1121.829 kb on - strand, within Dsui_1086 at 1121.831 kb on - strand, within Dsui_1086 at 1121.845 kb on - strand, within Dsui_1086 at 1121.913 kb on + strand, within Dsui_1086 at 1121.916 kb on - strand, within Dsui_1086 at 1121.921 kb on - strand, within Dsui_1086 at 1121.923 kb on + strand, within Dsui_1086 at 1121.931 kb on - strand, within Dsui_1086 at 1121.970 kb on + strand, within Dsui_1086 at 1121.977 kb on - strand, within Dsui_1086 at 1122.007 kb on + strand, within Dsui_1086 at 1122.089 kb on - strand, within Dsui_1086 at 1122.122 kb on + strand, within Dsui_1086 at 1122.122 kb on + strand, within Dsui_1086 at 1122.147 kb on - strand, within Dsui_1086 at 1122.202 kb on + strand, within Dsui_1086 at 1122.239 kb on - strand, within Dsui_1086 at 1122.277 kb on + strand, within Dsui_1086 at 1122.287 kb on + strand, within Dsui_1086 at 1122.342 kb on - strand, within Dsui_1086 at 1122.375 kb on + strand, within Dsui_1086 at 1122.380 kb on + strand, within Dsui_1086 at 1122.432 kb on + strand, within Dsui_1086 at 1122.433 kb on + strand, within Dsui_1086 at 1122.434 kb on - strand, within Dsui_1086 at 1122.438 kb on + strand, within Dsui_1086 at 1122.443 kb on + strand, within Dsui_1086 at 1122.446 kb on - strand, within Dsui_1086 at 1122.451 kb on - strand, within Dsui_1086 at 1122.451 kb on - strand, within Dsui_1086 at 1122.451 kb on - strand, within Dsui_1086 at 1122.451 kb on - strand, within Dsui_1086 at 1122.506 kb on - strand, within Dsui_1086 at 1122.522 kb on - strand, within Dsui_1086 at 1122.544 kb on - strand, within Dsui_1086 at 1122.544 kb on - strand, within Dsui_1086 at 1122.637 kb on - strand, within Dsui_1086 at 1122.670 kb on + strand, within Dsui_1086 at 1122.678 kb on - strand, within Dsui_1086 at 1122.678 kb on - strand, within Dsui_1086 at 1122.708 kb on - strand, within Dsui_1086 at 1122.779 kb on - strand, within Dsui_1086 at 1122.797 kb on + strand, within Dsui_1086 at 1122.845 kb on + strand, within Dsui_1086 at 1122.853 kb on - strand, within Dsui_1086 at 1122.950 kb on - strand, within Dsui_1086 at 1122.958 kb on + strand, within Dsui_1086 at 1122.966 kb on - strand, within Dsui_1086 at 1122.987 kb on + strand, within Dsui_1086 at 1122.993 kb on + strand, within Dsui_1086 at 1123.004 kb on + strand, within Dsui_1086 at 1123.004 kb on + strand, within Dsui_1086 at 1123.004 kb on + strand, within Dsui_1086 at 1123.012 kb on - strand, within Dsui_1086 at 1123.012 kb on - strand, within Dsui_1086 at 1123.012 kb on - strand, within Dsui_1086 at 1123.012 kb on - strand, within Dsui_1086 at 1123.012 kb on - strand, within Dsui_1086 at 1123.014 kb on + strand, within Dsui_1086 at 1123.014 kb on + strand, within Dsui_1086 at 1123.022 kb on - strand, within Dsui_1086 at 1123.022 kb on - strand, within Dsui_1086 at 1123.043 kb on + strand, within Dsui_1086 at 1123.053 kb on + strand, within Dsui_1086 at 1123.070 kb on + strand, within Dsui_1086 at 1123.084 kb on + strand, within Dsui_1086 at 1123.094 kb on + strand, within Dsui_1086 at 1123.094 kb on + strand, within Dsui_1086 at 1123.099 kb on - strand, within Dsui_1086 at 1123.101 kb on + strand, within Dsui_1086 at 1123.101 kb on + strand, within Dsui_1086 at 1123.109 kb on - strand, within Dsui_1086 at 1123.115 kb on + strand, within Dsui_1086 at 1123.148 kb on - strand, within Dsui_1086 at 1123.234 kb on + strand, within Dsui_1086 at 1123.283 kb on - strand, within Dsui_1086 at 1123.283 kb on - strand, within Dsui_1086 at 1123.291 kb on - strand, within Dsui_1086 at 1123.354 kb on + strand, within Dsui_1086 at 1123.362 kb on - strand, within Dsui_1086 at 1123.362 kb on - strand, within Dsui_1086 at 1123.374 kb on + strand at 1123.374 kb on + strand at 1123.374 kb on + strand at 1123.382 kb on - strand at 1123.386 kb on + strand at 1123.394 kb on - strand at 1123.396 kb on - strand at 1123.424 kb on - strand at 1123.494 kb on + strand at 1123.502 kb on - strand at 1123.580 kb on - strand at 1123.597 kb on + strand at 1123.605 kb on + strand at 1123.605 kb on + strand at 1123.605 kb on + strand at 1123.610 kb on + strand at 1123.613 kb on - strand at 1123.613 kb on - strand at 1123.618 kb on - strand at 1123.618 kb on - strand at 1123.618 kb on - strand at 1123.666 kb on + strand at 1123.678 kb on + strand at 1123.686 kb on + strand at 1123.695 kb on - strand at 1123.696 kb on + strand at 1123.738 kb on - strand at 1123.757 kb on - strand at 1123.757 kb on - strand at 1123.762 kb on - strand at 1123.810 kb on + strand, within Dsui_1087 at 1123.817 kb on + strand, within Dsui_1087 at 1123.817 kb on + strand, within Dsui_1087 at 1123.817 kb on + strand, within Dsui_1087 at 1123.817 kb on + strand, within Dsui_1087 at 1123.825 kb on - strand, within Dsui_1087 at 1123.825 kb on - strand, within Dsui_1087 at 1123.973 kb on - strand, within Dsui_1087 at 1124.002 kb on + strand, within Dsui_1087 at 1124.027 kb on + strand, within Dsui_1087 at 1124.035 kb on - strand, within Dsui_1087 at 1124.081 kb on + strand, within Dsui_1087 at 1124.081 kb on + strand, within Dsui_1087 at 1124.086 kb on + strand, within Dsui_1087 at 1124.086 kb on + strand, within Dsui_1087 at 1124.089 kb on - strand, within Dsui_1087 at 1124.089 kb on - strand, within Dsui_1087 at 1124.091 kb on + strand, within Dsui_1087 at 1124.091 kb on + strand, within Dsui_1087 at 1124.091 kb on + strand, within Dsui_1087 at 1124.099 kb on - strand, within Dsui_1087 at 1124.172 kb on + strand, within Dsui_1087 at 1124.217 kb on - strand, within Dsui_1087 at 1124.217 kb on - strand, within Dsui_1087 at 1124.237 kb on - strand, within Dsui_1087 at 1124.268 kb on + strand, within Dsui_1087 at 1124.275 kb on + strand, within Dsui_1087 at 1124.297 kb on + strand, within Dsui_1087 at 1124.334 kb on - strand, within Dsui_1087 at 1124.408 kb on + strand, within Dsui_1087 at 1124.408 kb on + strand, within Dsui_1087 at 1124.416 kb on - strand, within Dsui_1087 at 1124.416 kb on - strand, within Dsui_1087 at 1124.416 kb on - strand, within Dsui_1087 at 1124.486 kb on + strand, within Dsui_1087 at 1124.494 kb on - strand, within Dsui_1087 at 1124.494 kb on - strand, within Dsui_1087 at 1124.503 kb on - strand, within Dsui_1087 at 1124.545 kb on - strand, within Dsui_1087 at 1124.545 kb on - strand, within Dsui_1087 at 1124.561 kb on - strand, within Dsui_1087
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 1,120,251 + -2.3 1,120,276 - +0.7 1,120,362 + Dsui_1085 0.16 +0.7 1,120,370 - Dsui_1085 0.17 -0.8 1,120,392 - Dsui_1085 0.19 -0.3 1,120,422 + Dsui_1085 0.22 +0.7 1,120,422 + Dsui_1085 0.22 -1.8 1,120,422 + Dsui_1085 0.22 -0.3 1,120,430 - Dsui_1085 0.23 +0.7 1,120,430 - Dsui_1085 0.23 -1.3 1,120,456 + Dsui_1085 0.25 -1.0 1,120,459 - Dsui_1085 0.25 -1.3 1,120,477 + Dsui_1085 0.27 +0.7 1,120,497 - Dsui_1085 0.29 -0.3 1,120,565 - Dsui_1085 0.35 +0.7 1,120,565 - Dsui_1085 0.35 +0.7 1,120,576 + Dsui_1085 0.36 -1.3 1,120,620 - Dsui_1085 0.41 -0.3 1,120,620 - Dsui_1085 0.41 -1.8 1,120,752 - Dsui_1085 0.53 -0.3 1,120,791 + Dsui_1085 0.57 -0.8 1,120,791 + Dsui_1085 0.57 +0.7 1,120,791 + Dsui_1085 0.57 -0.8 1,120,791 + Dsui_1085 0.57 -1.3 1,120,799 - Dsui_1085 0.58 -0.3 1,120,831 - Dsui_1085 0.61 +0.7 1,120,846 + Dsui_1085 0.62 -0.6 1,120,944 + Dsui_1085 0.72 +0.7 1,120,961 + Dsui_1085 0.73 +0.7 1,120,981 - Dsui_1085 0.75 +0.7 1,121,054 + Dsui_1085 0.82 -1.8 1,121,066 - Dsui_1085 0.83 -1.6 1,121,077 - Dsui_1085 0.84 +0.7 1,121,100 - Dsui_1085 0.86 +0.7 1,121,105 - Dsui_1085 0.87 -0.3 1,121,164 + -2.0 1,121,172 - +0.7 1,121,172 - +0.7 1,121,172 - +0.7 1,121,172 - -0.3 1,121,193 + +2.1 1,121,195 - -1.3 1,121,249 - +0.7 1,121,283 + +0.7 1,121,285 + +1.7 1,121,285 + -0.8 1,121,291 - -0.3 1,121,389 + +0.7 1,121,401 + -0.3 1,121,409 - -0.3 1,121,409 - +0.7 1,121,423 + -0.3 1,121,423 + -0.4 1,121,426 - -1.0 1,121,431 - -0.8 1,121,441 - +0.7 1,121,456 - -0.3 1,121,500 + Dsui_1086 0.11 -1.3 1,121,517 + Dsui_1086 0.12 -2.8 1,121,597 + Dsui_1086 0.15 +0.0 1,121,605 - Dsui_1086 0.15 -0.3 1,121,605 - Dsui_1086 0.15 -2.1 1,121,678 + Dsui_1086 0.18 -1.3 1,121,768 - Dsui_1086 0.22 -0.3 1,121,773 - Dsui_1086 0.23 -0.8 1,121,781 + Dsui_1086 0.23 +0.2 1,121,789 - Dsui_1086 0.23 +0.7 1,121,811 + Dsui_1086 0.24 +0.7 1,121,829 - Dsui_1086 0.25 +0.7 1,121,831 - Dsui_1086 0.25 +0.7 1,121,845 - Dsui_1086 0.26 -0.3 1,121,913 + Dsui_1086 0.28 -0.3 1,121,916 - Dsui_1086 0.29 -0.3 1,121,921 - Dsui_1086 0.29 -0.3 1,121,923 + Dsui_1086 0.29 -2.3 1,121,931 - Dsui_1086 0.29 -2.4 1,121,970 + Dsui_1086 0.31 -2.1 1,121,977 - Dsui_1086 0.31 +0.7 1,122,007 + Dsui_1086 0.32 +0.7 1,122,089 - Dsui_1086 0.36 +0.7 1,122,122 + Dsui_1086 0.37 -2.3 1,122,122 + Dsui_1086 0.37 -1.3 1,122,147 - Dsui_1086 0.38 -1.6 1,122,202 + Dsui_1086 0.41 +0.7 1,122,239 - Dsui_1086 0.42 +0.7 1,122,277 + Dsui_1086 0.44 -2.3 1,122,287 + Dsui_1086 0.44 +0.7 1,122,342 - Dsui_1086 0.46 +0.7 1,122,375 + Dsui_1086 0.48 +0.7 1,122,380 + Dsui_1086 0.48 -1.3 1,122,432 + Dsui_1086 0.50 -0.8 1,122,433 + Dsui_1086 0.50 -1.3 1,122,434 - Dsui_1086 0.50 +0.7 1,122,438 + Dsui_1086 0.51 -0.8 1,122,443 + Dsui_1086 0.51 +0.7 1,122,446 - Dsui_1086 0.51 -3.3 1,122,451 - Dsui_1086 0.51 +0.7 1,122,451 - Dsui_1086 0.51 +0.7 1,122,451 - Dsui_1086 0.51 -0.3 1,122,451 - Dsui_1086 0.51 -0.8 1,122,506 - Dsui_1086 0.53 -2.7 1,122,522 - Dsui_1086 0.54 -0.3 1,122,544 - Dsui_1086 0.55 -0.8 1,122,544 - Dsui_1086 0.55 -0.8 1,122,637 - Dsui_1086 0.59 +0.7 1,122,670 + Dsui_1086 0.60 -0.8 1,122,678 - Dsui_1086 0.61 +0.7 1,122,678 - Dsui_1086 0.61 -0.3 1,122,708 - Dsui_1086 0.62 +0.7 1,122,779 - Dsui_1086 0.65 +0.7 1,122,797 + Dsui_1086 0.66 +0.7 1,122,845 + Dsui_1086 0.68 +0.7 1,122,853 - Dsui_1086 0.68 -0.8 1,122,950 - Dsui_1086 0.72 -0.3 1,122,958 + Dsui_1086 0.72 -0.3 1,122,966 - Dsui_1086 0.73 +0.7 1,122,987 + Dsui_1086 0.74 -3.5 1,122,993 + Dsui_1086 0.74 -0.8 1,123,004 + Dsui_1086 0.74 -1.3 1,123,004 + Dsui_1086 0.74 -0.3 1,123,004 + Dsui_1086 0.74 -0.3 1,123,012 - Dsui_1086 0.75 -2.4 1,123,012 - Dsui_1086 0.75 -0.3 1,123,012 - Dsui_1086 0.75 +0.7 1,123,012 - Dsui_1086 0.75 -0.3 1,123,012 - Dsui_1086 0.75 -0.8 1,123,014 + Dsui_1086 0.75 -1.1 1,123,014 + Dsui_1086 0.75 -0.8 1,123,022 - Dsui_1086 0.75 -0.3 1,123,022 - Dsui_1086 0.75 +0.7 1,123,043 + Dsui_1086 0.76 -0.3 1,123,053 + Dsui_1086 0.76 -0.8 1,123,070 + Dsui_1086 0.77 +0.7 1,123,084 + Dsui_1086 0.78 +1.7 1,123,094 + Dsui_1086 0.78 +0.7 1,123,094 + Dsui_1086 0.78 +0.7 1,123,099 - Dsui_1086 0.78 -0.3 1,123,101 + Dsui_1086 0.78 +0.7 1,123,101 + Dsui_1086 0.78 +0.7 1,123,109 - Dsui_1086 0.79 +0.7 1,123,115 + Dsui_1086 0.79 -1.3 1,123,148 - Dsui_1086 0.80 +0.7 1,123,234 + Dsui_1086 0.84 +0.7 1,123,283 - Dsui_1086 0.86 +0.7 1,123,283 - Dsui_1086 0.86 -1.6 1,123,291 - Dsui_1086 0.86 +1.7 1,123,354 + Dsui_1086 0.89 +0.0 1,123,362 - Dsui_1086 0.89 -0.3 1,123,362 - Dsui_1086 0.89 +0.7 1,123,374 + +0.7 1,123,374 + +1.7 1,123,374 + -0.3 1,123,382 - +0.7 1,123,386 + +0.7 1,123,394 - -1.8 1,123,396 - -1.3 1,123,424 - -0.8 1,123,494 + +0.7 1,123,502 - -0.8 1,123,580 - -2.3 1,123,597 + -0.3 1,123,605 + +0.0 1,123,605 + -0.8 1,123,605 + -2.3 1,123,610 + -1.3 1,123,613 - -1.3 1,123,613 - +0.7 1,123,618 - +0.7 1,123,618 - +0.7 1,123,618 - -2.1 1,123,666 + +0.7 1,123,678 + -1.6 1,123,686 + -0.8 1,123,695 - +0.7 1,123,696 + +0.7 1,123,738 - +1.7 1,123,757 - -1.3 1,123,757 - -0.8 1,123,762 - +0.7 1,123,810 + Dsui_1087 0.13 -0.7 1,123,817 + Dsui_1087 0.13 -0.3 1,123,817 + Dsui_1087 0.13 +0.7 1,123,817 + Dsui_1087 0.13 -1.2 1,123,817 + Dsui_1087 0.13 +0.7 1,123,825 - Dsui_1087 0.14 -0.8 1,123,825 - Dsui_1087 0.14 -0.3 1,123,973 - Dsui_1087 0.24 +0.7 1,124,002 + Dsui_1087 0.26 -1.3 1,124,027 + Dsui_1087 0.27 -0.8 1,124,035 - Dsui_1087 0.28 +0.7 1,124,081 + Dsui_1087 0.31 -0.3 1,124,081 + Dsui_1087 0.31 -0.3 1,124,086 + Dsui_1087 0.31 -0.3 1,124,086 + Dsui_1087 0.31 -1.3 1,124,089 - Dsui_1087 0.32 -0.8 1,124,089 - Dsui_1087 0.32 -0.8 1,124,091 + Dsui_1087 0.32 -0.3 1,124,091 + Dsui_1087 0.32 -1.1 1,124,091 + Dsui_1087 0.32 -2.2 1,124,099 - Dsui_1087 0.32 +0.7 1,124,172 + Dsui_1087 0.37 +0.2 1,124,217 - Dsui_1087 0.40 +0.7 1,124,217 - Dsui_1087 0.40 +0.7 1,124,237 - Dsui_1087 0.41 +0.7 1,124,268 + Dsui_1087 0.44 +0.7 1,124,275 + Dsui_1087 0.44 -0.3 1,124,297 + Dsui_1087 0.45 +0.7 1,124,334 - Dsui_1087 0.48 -0.3 1,124,408 + Dsui_1087 0.53 +0.7 1,124,408 + Dsui_1087 0.53 -0.8 1,124,416 - Dsui_1087 0.53 -1.3 1,124,416 - Dsui_1087 0.53 +0.7 1,124,416 - Dsui_1087 0.53 -0.8 1,124,486 + Dsui_1087 0.58 +1.7 1,124,494 - Dsui_1087 0.59 -0.3 1,124,494 - Dsui_1087 0.59 -2.4 1,124,503 - Dsui_1087 0.59 +0.7 1,124,545 - Dsui_1087 0.62 -1.8 1,124,545 - Dsui_1087 0.62 -0.8 1,124,561 - Dsui_1087 0.63 -0.3
Or see this region's nucleotide sequence