Strain Fitness in Dechlorosoma suillum PS around Dsui_0962

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0960 and Dsui_0961 are separated by 96 nucleotidesDsui_0961 and Dsui_0962 are separated by 140 nucleotidesDsui_0962 and Dsui_0963 are separated by 17 nucleotidesDsui_0963 and Dsui_0964 are separated by 1 nucleotides Dsui_0960: Dsui_0960 - putative permease, at 985,700 to 986,755 _0960 Dsui_0961: Dsui_0961 - RNA polymerase sigma factor, SigZ family, at 986,852 to 987,415 _0961 Dsui_0962: Dsui_0962 - collagenase-like protease, at 987,556 to 988,569 _0962 Dsui_0963: Dsui_0963 - collagenase-like protease, at 988,587 to 989,498 _0963 Dsui_0964: Dsui_0964 - putative lipid carrier protein, at 989,500 to 989,997 _0964 Position (kb) 987 988 989Strain fitness (log2 ratio) -2 -1 0 1at 986.593 kb on + strand, within Dsui_0960at 986.611 kb on + strand, within Dsui_0960at 986.852 kb on - strandat 986.927 kb on + strandat 986.975 kb on + strand, within Dsui_0961at 986.996 kb on - strand, within Dsui_0961at 987.008 kb on - strand, within Dsui_0961at 987.216 kb on - strand, within Dsui_0961at 987.228 kb on + strandat 987.316 kb on + strand, within Dsui_0961at 987.324 kb on - strand, within Dsui_0961at 987.436 kb on + strandat 987.480 kb on - strandat 987.524 kb on - strandat 987.524 kb on - strandat 987.599 kb on + strandat 987.721 kb on + strand, within Dsui_0962at 987.773 kb on + strand, within Dsui_0962at 987.845 kb on + strand, within Dsui_0962at 987.845 kb on + strand, within Dsui_0962at 987.919 kb on + strand, within Dsui_0962at 987.924 kb on + strand, within Dsui_0962at 987.946 kb on - strand, within Dsui_0962at 987.988 kb on + strand, within Dsui_0962at 988.074 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.256 kb on + strand, within Dsui_0962at 988.264 kb on - strand, within Dsui_0962at 988.284 kb on + strand, within Dsui_0962at 988.350 kb on - strand, within Dsui_0962at 988.411 kb on - strand, within Dsui_0962at 988.462 kb on - strand, within Dsui_0962at 988.619 kb on - strandat 988.630 kb on - strandat 988.888 kb on - strand, within Dsui_0963at 988.896 kb on - strand, within Dsui_0963at 988.967 kb on - strand, within Dsui_0963at 989.027 kb on + strand, within Dsui_0963at 989.081 kb on - strand, within Dsui_0963at 989.167 kb on - strand, within Dsui_0963at 989.273 kb on + strand, within Dsui_0963at 989.320 kb on + strand, within Dsui_0963at 989.428 kb on - strandat 989.473 kb on + strandat 989.497 kb on + strandat 989.530 kb on - strandat 989.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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986,593 + Dsui_0960 0.85 -0.2
986,611 + Dsui_0960 0.86 +0.8
986,852 - +0.8
986,927 + +0.8
986,975 + Dsui_0961 0.22 +0.8
986,996 - Dsui_0961 0.26 +0.8
987,008 - Dsui_0961 0.28 -1.0
987,216 - Dsui_0961 0.65 -0.2
987,228 + +0.8
987,316 + Dsui_0961 0.82 -0.2
987,324 - Dsui_0961 0.84 -0.8
987,436 + -1.5
987,480 - +0.8
987,524 - +0.8
987,524 - -0.2
987,599 + -0.8
987,721 + Dsui_0962 0.16 -0.5
987,773 + Dsui_0962 0.21 -0.1
987,845 + Dsui_0962 0.29 +0.7
987,845 + Dsui_0962 0.29 -0.3
987,919 + Dsui_0962 0.36 +1.0
987,924 + Dsui_0962 0.36 -0.7
987,946 - Dsui_0962 0.38 -2.2
987,988 + Dsui_0962 0.43 -1.5
988,074 + Dsui_0962 0.51 -0.1
988,256 + Dsui_0962 0.69 -0.1
988,256 + Dsui_0962 0.69 +0.4
988,256 + Dsui_0962 0.69 +0.1
988,256 + Dsui_0962 0.69 +0.3
988,264 - Dsui_0962 0.70 +0.8
988,284 + Dsui_0962 0.72 +0.2
988,350 - Dsui_0962 0.78 -1.5
988,411 - Dsui_0962 0.84 -0.2
988,462 - Dsui_0962 0.89 -0.2
988,619 - +0.8
988,630 - -0.2
988,888 - Dsui_0963 0.33 -0.2
988,896 - Dsui_0963 0.34 -0.8
988,967 - Dsui_0963 0.42 -0.8
989,027 + Dsui_0963 0.48 -0.9
989,081 - Dsui_0963 0.54 -0.2
989,167 - Dsui_0963 0.64 -2.4
989,273 + Dsui_0963 0.75 +0.5
989,320 + Dsui_0963 0.80 -0.2
989,428 - +0.4
989,473 + -0.1
989,497 + -0.3
989,530 - -0.3
989,530 - -0.0

Or see this region's nucleotide sequence