Strain Fitness in Dechlorosoma suillum PS around Dsui_0838

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0837 and Dsui_0838 are separated by 77 nucleotidesDsui_0838 and Dsui_0839 are separated by 179 nucleotides Dsui_0837: Dsui_0837 - tRNA modification GTPase TrmE, at 851,146 to 852,498 _0837 Dsui_0838: Dsui_0838 - hypothetical protein, at 852,576 to 853,673 _0838 Dsui_0839: Dsui_0839 - ABC-type branched-chain amino acid transport system, periplasmic component, at 853,853 to 855,007 _0839 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1at 851.660 kb on - strandat 851.671 kb on - strandat 851.803 kb on + strand, within Dsui_0837at 851.839 kb on - strandat 851.839 kb on - strand, within Dsui_0837at 851.907 kb on + strand, within Dsui_0837at 851.977 kb on + strand, within Dsui_0837at 852.251 kb on + strand, within Dsui_0837at 852.441 kb on + strandat 852.477 kb on - strandat 852.568 kb on + strandat 852.568 kb on - strandat 852.597 kb on - strandat 852.609 kb on - strandat 852.646 kb on - strandat 852.727 kb on - strand, within Dsui_0838at 852.771 kb on - strandat 852.774 kb on + strand, within Dsui_0838at 852.860 kb on + strandat 852.860 kb on + strand, within Dsui_0838at 852.929 kb on + strand, within Dsui_0838at 852.950 kb on + strandat 853.004 kb on + strandat 853.058 kb on - strandat 853.147 kb on + strand, within Dsui_0838at 853.147 kb on + strand, within Dsui_0838at 853.188 kb on - strand, within Dsui_0838at 853.226 kb on - strand, within Dsui_0838at 853.241 kb on - strandat 853.243 kb on + strand, within Dsui_0838at 853.244 kb on + strand, within Dsui_0838at 853.252 kb on - strandat 853.253 kb on + strand, within Dsui_0838at 853.263 kb on + strand, within Dsui_0838at 853.289 kb on - strand, within Dsui_0838at 853.296 kb on - strandat 853.425 kb on + strand, within Dsui_0838at 853.460 kb on + strand, within Dsui_0838at 853.485 kb on + strand, within Dsui_0838at 853.485 kb on + strand, within Dsui_0838at 853.488 kb on - strand, within Dsui_0838at 853.535 kb on + strand, within Dsui_0838at 853.575 kb on - strandat 853.593 kb on - strandat 853.798 kb on + strandat 853.798 kb on + strandat 853.850 kb on - strandat 853.924 kb on - strandat 853.938 kb on + strandat 853.959 kb on + strandat 854.013 kb on - strandat 854.057 kb on + strand, within Dsui_0839at 854.057 kb on + strand, within Dsui_0839at 854.103 kb on - strandat 854.112 kb on + strand, within Dsui_0839at 854.115 kb on - strand, within Dsui_0839at 854.120 kb on - strand, within Dsui_0839at 854.151 kb on - strand, within Dsui_0839at 854.157 kb on - strand, within Dsui_0839at 854.161 kb on + strand, within Dsui_0839at 854.234 kb on + strand, within Dsui_0839at 854.264 kb on + strand, within Dsui_0839at 854.264 kb on + strand, within Dsui_0839at 854.272 kb on - strand, within Dsui_0839at 854.272 kb on - strand, within Dsui_0839at 854.303 kb on + strand, within Dsui_0839at 854.317 kb on - strand, within Dsui_0839at 854.391 kb on + strand, within Dsui_0839at 854.437 kb on - strand, within Dsui_0839at 854.523 kb on + strand, within Dsui_0839at 854.531 kb on - strand, within Dsui_0839at 854.557 kb on + strand, within Dsui_0839at 854.622 kb on + strand, within Dsui_0839at 854.629 kb on + strand, within Dsui_0839

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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851,660 - -0.3
851,671 - +0.7
851,803 + Dsui_0837 0.49 -1.1
851,839 - -1.8
851,839 - Dsui_0837 0.51 -1.3
851,907 + Dsui_0837 0.56 -1.6
851,977 + Dsui_0837 0.61 +0.7
852,251 + Dsui_0837 0.82 +0.4
852,441 + -0.8
852,477 - -0.8
852,568 + -0.5
852,568 - -0.8
852,597 - +0.7
852,609 - -0.8
852,646 - +0.7
852,727 - Dsui_0838 0.14 +0.7
852,771 - +0.7
852,774 + Dsui_0838 0.18 -2.4
852,860 + -0.8
852,860 + Dsui_0838 0.26 -1.6
852,929 + Dsui_0838 0.32 -0.8
852,950 + +0.7
853,004 + +0.7
853,058 - -0.3
853,147 + Dsui_0838 0.52 -0.3
853,147 + Dsui_0838 0.52 -2.7
853,188 - Dsui_0838 0.56 -0.8
853,226 - Dsui_0838 0.59 -1.6
853,241 - -0.3
853,243 + Dsui_0838 0.61 -0.8
853,244 + Dsui_0838 0.61 -1.3
853,252 - -0.3
853,253 + Dsui_0838 0.62 -0.3
853,263 + Dsui_0838 0.63 -0.3
853,289 - Dsui_0838 0.65 -1.3
853,296 - +0.7
853,425 + Dsui_0838 0.77 -1.3
853,460 + Dsui_0838 0.81 -0.3
853,485 + Dsui_0838 0.83 -1.3
853,485 + Dsui_0838 0.83 -1.3
853,488 - Dsui_0838 0.83 -1.3
853,535 + Dsui_0838 0.87 -0.8
853,575 - +0.7
853,593 - -0.3
853,798 + -0.3
853,798 + -0.2
853,850 - +0.7
853,924 - +0.7
853,938 + -0.3
853,959 + -0.3
854,013 - -0.8
854,057 + Dsui_0839 0.18 -1.6
854,057 + Dsui_0839 0.18 +0.7
854,103 - +0.7
854,112 + Dsui_0839 0.22 -1.3
854,115 - Dsui_0839 0.23 +0.7
854,120 - Dsui_0839 0.23 -0.3
854,151 - Dsui_0839 0.26 -0.8
854,157 - Dsui_0839 0.26 -1.8
854,161 + Dsui_0839 0.27 +0.7
854,234 + Dsui_0839 0.33 -0.3
854,264 + Dsui_0839 0.36 -0.3
854,264 + Dsui_0839 0.36 -0.3
854,272 - Dsui_0839 0.36 +0.7
854,272 - Dsui_0839 0.36 -2.1
854,303 + Dsui_0839 0.39 -0.3
854,317 - Dsui_0839 0.40 +0.7
854,391 + Dsui_0839 0.47 +0.7
854,437 - Dsui_0839 0.51 +0.7
854,523 + Dsui_0839 0.58 -0.8
854,531 - Dsui_0839 0.59 -2.1
854,557 + Dsui_0839 0.61 +0.7
854,622 + Dsui_0839 0.67 -1.4
854,629 + Dsui_0839 0.67 +0.7

Or see this region's nucleotide sequence