Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0819 and Dsui_0820 are separated by 10 nucleotides Dsui_0820 and Dsui_0821 are separated by 189 nucleotides
Dsui_0819: Dsui_0819 - DNA protecting protein DprA, at 830,349 to 831,467
_0819
Dsui_0820: Dsui_0820 - hypothetical protein, at 831,478 to 831,966
_0820
Dsui_0821: Dsui_0821 - DNA topoisomerase III, at 832,156 to 834,741
_0821
Position (kb) 831
832 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 830.500 kb on + strand, within Dsui_0819 at 830.543 kb on - strand, within Dsui_0819 at 830.546 kb on + strand, within Dsui_0819 at 830.547 kb on + strand, within Dsui_0819 at 830.555 kb on - strand, within Dsui_0819 at 830.555 kb on - strand, within Dsui_0819 at 830.555 kb on - strand, within Dsui_0819 at 830.581 kb on + strand, within Dsui_0819 at 830.595 kb on + strand, within Dsui_0819 at 830.603 kb on - strand, within Dsui_0819 at 830.605 kb on + strand, within Dsui_0819 at 830.634 kb on - strand, within Dsui_0819 at 830.645 kb on + strand, within Dsui_0819 at 830.653 kb on - strand, within Dsui_0819 at 830.658 kb on - strand, within Dsui_0819 at 830.662 kb on + strand, within Dsui_0819 at 830.662 kb on + strand, within Dsui_0819 at 830.685 kb on + strand, within Dsui_0819 at 830.688 kb on - strand, within Dsui_0819 at 830.688 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.693 kb on - strand, within Dsui_0819 at 830.718 kb on + strand, within Dsui_0819 at 830.726 kb on - strand, within Dsui_0819 at 830.733 kb on - strand, within Dsui_0819 at 830.733 kb on - strand, within Dsui_0819 at 830.771 kb on - strand, within Dsui_0819 at 830.801 kb on - strand, within Dsui_0819 at 830.817 kb on - strand, within Dsui_0819 at 830.858 kb on + strand, within Dsui_0819 at 830.879 kb on + strand, within Dsui_0819 at 830.879 kb on + strand, within Dsui_0819 at 830.887 kb on - strand, within Dsui_0819 at 830.929 kb on + strand, within Dsui_0819 at 830.962 kb on - strand, within Dsui_0819 at 831.017 kb on + strand, within Dsui_0819 at 831.019 kb on - strand, within Dsui_0819 at 831.020 kb on - strand, within Dsui_0819 at 831.020 kb on - strand, within Dsui_0819 at 831.025 kb on - strand, within Dsui_0819 at 831.029 kb on + strand, within Dsui_0819 at 831.088 kb on + strand, within Dsui_0819 at 831.112 kb on + strand, within Dsui_0819 at 831.171 kb on - strand, within Dsui_0819 at 831.183 kb on + strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.330 kb on - strand, within Dsui_0819 at 831.332 kb on + strand, within Dsui_0819 at 831.363 kb on + strand at 831.363 kb on + strand at 831.371 kb on - strand at 831.416 kb on + strand at 831.427 kb on + strand at 831.471 kb on - strand at 831.471 kb on - strand at 831.471 kb on - strand at 831.535 kb on - strand, within Dsui_0820 at 831.587 kb on + strand, within Dsui_0820 at 831.619 kb on + strand, within Dsui_0820 at 831.645 kb on + strand, within Dsui_0820 at 831.652 kb on - strand, within Dsui_0820 at 831.653 kb on + strand, within Dsui_0820 at 831.716 kb on - strand, within Dsui_0820 at 831.767 kb on + strand, within Dsui_0820 at 831.775 kb on - strand, within Dsui_0820 at 831.777 kb on + strand, within Dsui_0820 at 831.785 kb on - strand, within Dsui_0820 at 831.797 kb on + strand, within Dsui_0820 at 831.819 kb on - strand, within Dsui_0820 at 831.822 kb on + strand, within Dsui_0820 at 831.860 kb on + strand, within Dsui_0820 at 831.861 kb on + strand, within Dsui_0820 at 831.914 kb on + strand, within Dsui_0820 at 832.013 kb on + strand at 832.049 kb on + strand at 832.055 kb on + strand at 832.064 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 830,500 + Dsui_0819 0.13 -0.4 830,543 - Dsui_0819 0.17 -1.2 830,546 + Dsui_0819 0.18 +0.1 830,547 + Dsui_0819 0.18 -0.2 830,555 - Dsui_0819 0.18 -2.0 830,555 - Dsui_0819 0.18 -1.6 830,555 - Dsui_0819 0.18 -0.6 830,581 + Dsui_0819 0.21 +1.8 830,595 + Dsui_0819 0.22 +0.2 830,603 - Dsui_0819 0.23 -1.6 830,605 + Dsui_0819 0.23 -0.3 830,634 - Dsui_0819 0.25 -1.8 830,645 + Dsui_0819 0.26 -0.6 830,653 - Dsui_0819 0.27 +0.8 830,658 - Dsui_0819 0.28 -0.2 830,662 + Dsui_0819 0.28 -0.2 830,662 + Dsui_0819 0.28 +0.1 830,685 + Dsui_0819 0.30 -0.4 830,688 - Dsui_0819 0.30 -2.4 830,688 - Dsui_0819 0.30 +0.8 830,693 - Dsui_0819 0.31 -3.0 830,693 - Dsui_0819 0.31 -1.2 830,693 - Dsui_0819 0.31 +1.2 830,693 - Dsui_0819 0.31 -2.0 830,718 + Dsui_0819 0.33 -0.4 830,726 - Dsui_0819 0.34 -1.2 830,733 - Dsui_0819 0.34 -0.8 830,733 - Dsui_0819 0.34 -0.2 830,771 - Dsui_0819 0.38 -1.2 830,801 - Dsui_0819 0.40 -0.6 830,817 - Dsui_0819 0.42 -2.0 830,858 + Dsui_0819 0.45 -1.0 830,879 + Dsui_0819 0.47 +0.0 830,879 + Dsui_0819 0.47 -0.6 830,887 - Dsui_0819 0.48 -1.7 830,929 + Dsui_0819 0.52 -1.2 830,962 - Dsui_0819 0.55 -0.2 831,017 + Dsui_0819 0.60 -0.7 831,019 - Dsui_0819 0.60 -3.5 831,020 - Dsui_0819 0.60 -0.2 831,020 - Dsui_0819 0.60 +0.8 831,025 - Dsui_0819 0.60 -0.5 831,029 + Dsui_0819 0.61 -1.5 831,088 + Dsui_0819 0.66 -1.1 831,112 + Dsui_0819 0.68 -0.6 831,171 - Dsui_0819 0.73 +0.8 831,183 + Dsui_0819 0.75 +1.8 831,330 - Dsui_0819 0.88 +0.8 831,330 - Dsui_0819 0.88 -0.6 831,330 - Dsui_0819 0.88 +2.1 831,332 + Dsui_0819 0.88 -1.6 831,363 + -0.8 831,363 + -0.2 831,371 - -0.6 831,416 + -0.2 831,427 + -0.3 831,471 - -0.7 831,471 - -1.0 831,471 - +0.3 831,535 - Dsui_0820 0.12 -1.4 831,587 + Dsui_0820 0.22 -0.1 831,619 + Dsui_0820 0.29 -0.3 831,645 + Dsui_0820 0.34 +0.0 831,652 - Dsui_0820 0.36 -2.0 831,653 + Dsui_0820 0.36 -0.2 831,716 - Dsui_0820 0.49 -1.2 831,767 + Dsui_0820 0.59 -0.3 831,775 - Dsui_0820 0.61 -0.8 831,777 + Dsui_0820 0.61 +0.1 831,785 - Dsui_0820 0.63 -1.0 831,797 + Dsui_0820 0.65 -0.0 831,819 - Dsui_0820 0.70 -1.5 831,822 + Dsui_0820 0.70 +0.2 831,860 + Dsui_0820 0.78 -0.2 831,861 + Dsui_0820 0.78 -0.1 831,914 + Dsui_0820 0.89 -0.1 832,013 + +0.0 832,049 + -0.1 832,055 + -0.2 832,064 + +0.1
Or see this region's nucleotide sequence