Strain Fitness in Dechlorosoma suillum PS around Dsui_0576

Experiment: ALP with sodium fluoride 30 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0575 and Dsui_0576 are separated by 21 nucleotidesDsui_0576 and Dsui_0577 overlap by 8 nucleotidesDsui_0577 and Dsui_0578 are separated by 14 nucleotides Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273 _0575 Dsui_0576: Dsui_0576 - electron transfer flavoprotein, beta subunit, at 574,295 to 575,140 _0576 Dsui_0577: Dsui_0577 - Nitrogen fixation protein NifW, at 575,133 to 575,465 _0577 Dsui_0578: Dsui_0578 - homocitrate synthase NifV, at 575,480 to 576,634 _0578 Position (kb) 574 575 576Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 573.332 kb on - strand, within Dsui_0575at 573.334 kb on + strand, within Dsui_0575at 573.484 kb on + strand, within Dsui_0575at 573.716 kb on - strand, within Dsui_0575at 573.737 kb on - strand, within Dsui_0575at 573.864 kb on - strand, within Dsui_0575at 573.904 kb on + strandat 573.964 kb on + strand, within Dsui_0575at 574.022 kb on - strand, within Dsui_0575at 574.065 kb on - strand, within Dsui_0575at 574.077 kb on + strand, within Dsui_0575at 574.095 kb on + strand, within Dsui_0575at 574.155 kb on - strand, within Dsui_0575at 574.202 kb on - strandat 574.273 kb on + strandat 574.283 kb on + strandat 574.301 kb on - strandat 574.341 kb on + strandat 574.344 kb on - strandat 574.349 kb on - strandat 574.360 kb on - strandat 574.362 kb on + strandat 574.461 kb on - strand, within Dsui_0576at 574.519 kb on + strand, within Dsui_0576at 574.591 kb on - strand, within Dsui_0576at 574.592 kb on - strand, within Dsui_0576at 575.106 kb on + strandat 575.116 kb on + strandat 575.124 kb on - strandat 575.135 kb on + strandat 575.150 kb on + strandat 575.150 kb on + strandat 575.195 kb on - strand, within Dsui_0577at 575.329 kb on + strand, within Dsui_0577at 575.348 kb on + strand, within Dsui_0577at 575.348 kb on + strand, within Dsui_0577at 575.467 kb on + strandat 575.470 kb on - strandat 575.556 kb on - strandat 575.578 kb on - strandat 575.604 kb on - strand, within Dsui_0578at 575.628 kb on - strand, within Dsui_0578at 575.706 kb on + strand, within Dsui_0578at 575.962 kb on + strand, within Dsui_0578at 575.977 kb on - strand, within Dsui_0578at 575.982 kb on + strand, within Dsui_0578at 575.990 kb on - strand, within Dsui_0578

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
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573,332 - Dsui_0575 0.13 -0.3
573,334 + Dsui_0575 0.13 +0.7
573,484 + Dsui_0575 0.27 -0.9
573,716 - Dsui_0575 0.48 -3.0
573,737 - Dsui_0575 0.50 +0.7
573,864 - Dsui_0575 0.62 -1.3
573,904 + +0.7
573,964 + Dsui_0575 0.71 +0.7
574,022 - Dsui_0575 0.77 -0.3
574,065 - Dsui_0575 0.81 -0.9
574,077 + Dsui_0575 0.82 +0.7
574,095 + Dsui_0575 0.83 +0.7
574,155 - Dsui_0575 0.89 -1.3
574,202 - -0.3
574,273 + -0.9
574,283 + +0.7
574,301 - -0.9
574,341 + +0.7
574,344 - -0.3
574,349 - -1.3
574,360 - -1.7
574,362 + -0.3
574,461 - Dsui_0576 0.20 +0.7
574,519 + Dsui_0576 0.26 -1.3
574,591 - Dsui_0576 0.35 -1.3
574,592 - Dsui_0576 0.35 +0.7
575,106 + -1.3
575,116 + +0.7
575,124 - +0.7
575,135 + -0.9
575,150 + +0.7
575,150 + +0.7
575,195 - Dsui_0577 0.19 -2.5
575,329 + Dsui_0577 0.59 -0.9
575,348 + Dsui_0577 0.65 +0.7
575,348 + Dsui_0577 0.65 +0.7
575,467 + -0.3
575,470 - -3.9
575,556 - -0.9
575,578 - -0.3
575,604 - Dsui_0578 0.11 -0.3
575,628 - Dsui_0578 0.13 +0.7
575,706 + Dsui_0578 0.20 +0.7
575,962 + Dsui_0578 0.42 -1.9
575,977 - Dsui_0578 0.43 -0.3
575,982 + Dsui_0578 0.43 -0.3
575,990 - Dsui_0578 0.44 -1.7

Or see this region's nucleotide sequence