Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0554 and Dsui_0555 are separated by 8 nucleotides Dsui_0555 and Dsui_0556 are separated by 21 nucleotides Dsui_0556 and Dsui_0557 are separated by 26 nucleotides Dsui_0557 and Dsui_0558 overlap by 33 nucleotides
Dsui_0554: Dsui_0554 - uncharacterized conserved small protein containing a coiled-coil domain, at 557,198 to 557,395
_0554
Dsui_0555: Dsui_0555 - hypothetical protein, at 557,404 to 557,784
_0555
Dsui_0556: Dsui_0556 - ferredoxin III, nif-specific, at 557,806 to 558,105
_0556
Dsui_0557: Dsui_0557 - NifQ, at 558,132 to 558,557
_0557
Dsui_0558: Dsui_0558 - tetratricopeptide repeat protein, at 558,525 to 559,973
_0558
Position (kb) 558
559 Strain fitness (log2 ratio) -2
-1
0
1 at 557.168 kb on - strand at 557.254 kb on - strand, within Dsui_0554 at 557.259 kb on - strand, within Dsui_0554 at 557.266 kb on - strand, within Dsui_0554 at 557.335 kb on - strand, within Dsui_0554 at 557.534 kb on - strand, within Dsui_0555 at 557.641 kb on + strand, within Dsui_0555 at 557.753 kb on + strand at 557.770 kb on + strand at 557.829 kb on + strand at 557.848 kb on + strand, within Dsui_0556 at 558.041 kb on + strand, within Dsui_0556 at 558.083 kb on + strand at 558.247 kb on - strand, within Dsui_0557 at 558.323 kb on - strand, within Dsui_0557 at 558.393 kb on + strand, within Dsui_0557 at 558.441 kb on + strand, within Dsui_0557 at 558.477 kb on - strand, within Dsui_0557 at 558.540 kb on - strand at 558.581 kb on - strand at 558.581 kb on - strand at 558.629 kb on + strand at 559.118 kb on - strand, within Dsui_0558 at 559.172 kb on - strand, within Dsui_0558 at 559.224 kb on + strand, within Dsui_0558 at 559.284 kb on + strand, within Dsui_0558 at 559.321 kb on - strand, within Dsui_0558 at 559.362 kb on - strand, within Dsui_0558 at 559.368 kb on - strand, within Dsui_0558 at 559.535 kb on + strand at 559.543 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 557,168 - -0.3 557,254 - Dsui_0554 0.28 -0.3 557,259 - Dsui_0554 0.31 -0.3 557,266 - Dsui_0554 0.34 -1.3 557,335 - Dsui_0554 0.69 -0.3 557,534 - Dsui_0555 0.34 +0.7 557,641 + Dsui_0555 0.62 -0.9 557,753 + -1.3 557,770 + +0.7 557,829 + -0.3 557,848 + Dsui_0556 0.14 +0.7 558,041 + Dsui_0556 0.78 +0.7 558,083 + +0.7 558,247 - Dsui_0557 0.27 -1.9 558,323 - Dsui_0557 0.45 -0.9 558,393 + Dsui_0557 0.61 +0.7 558,441 + Dsui_0557 0.73 -0.3 558,477 - Dsui_0557 0.81 -1.3 558,540 - -0.3 558,581 - -0.3 558,581 - +0.7 558,629 + -1.9 559,118 - Dsui_0558 0.41 -1.3 559,172 - Dsui_0558 0.45 -0.3 559,224 + Dsui_0558 0.48 -0.9 559,284 + Dsui_0558 0.52 -2.3 559,321 - Dsui_0558 0.55 +0.7 559,362 - Dsui_0558 0.58 -1.9 559,368 - Dsui_0558 0.58 +0.7 559,535 + +0.7 559,543 - -0.3
Or see this region's nucleotide sequence