Strain Fitness in Dechlorosoma suillum PS around Dsui_0527

Experiment: ALP with sodium fluoride 30 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0524 and Dsui_0525 overlap by 11 nucleotidesDsui_0525 and Dsui_0527 are separated by 288 nucleotidesDsui_0527 and Dsui_0528 overlap by 4 nucleotidesDsui_0528 and Dsui_0529 are separated by 485 nucleotides Dsui_0524: Dsui_0524 - putative permease, at 531,405 to 532,208 _0524 Dsui_0525: Dsui_0525 - hypothetical protein, at 532,198 to 532,668 _0525 Dsui_0527: Dsui_0527 - hypothetical protein, at 532,957 to 533,286 _0527 Dsui_0528: Dsui_0528 - hypothetical protein, at 533,283 to 533,486 _0528 Dsui_0529: Dsui_0529 - outer membrane cobalamin receptor protein, at 533,972 to 535,936 _0529 Position (kb) 532 533 534Strain fitness (log2 ratio) -2 -1 0 1at 531.986 kb on + strand, within Dsui_0524at 532.037 kb on - strand, within Dsui_0524at 532.077 kb on - strand, within Dsui_0524at 532.167 kb on + strandat 532.173 kb on + strandat 532.175 kb on - strandat 532.185 kb on - strandat 532.213 kb on - strandat 532.218 kb on + strandat 532.218 kb on - strandat 532.248 kb on + strand, within Dsui_0525at 532.298 kb on + strand, within Dsui_0525at 532.312 kb on + strand, within Dsui_0525at 532.371 kb on + strand, within Dsui_0525at 532.371 kb on + strand, within Dsui_0525at 532.429 kb on + strand, within Dsui_0525at 532.453 kb on + strand, within Dsui_0525at 532.646 kb on + strandat 532.658 kb on + strandat 532.678 kb on - strandat 532.686 kb on - strandat 532.736 kb on + strandat 532.844 kb on + strandat 532.978 kb on + strandat 533.028 kb on + strand, within Dsui_0527at 533.068 kb on + strand, within Dsui_0527at 533.068 kb on + strand, within Dsui_0527at 533.147 kb on + strand, within Dsui_0527at 533.152 kb on + strand, within Dsui_0527at 533.155 kb on - strand, within Dsui_0527at 533.307 kb on - strand, within Dsui_0528at 533.489 kb on - strandat 533.520 kb on + strandat 533.526 kb on + strandat 533.526 kb on - strandat 533.534 kb on - strandat 533.724 kb on - strandat 533.738 kb on + strandat 533.855 kb on + strandat 533.962 kb on + strandat 533.970 kb on - strandat 533.977 kb on - strandat 534.008 kb on + strandat 534.260 kb on - strandat 534.279 kb on + strand, within Dsui_0529

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM
remove
531,986 + Dsui_0524 0.72 -1.7
532,037 - Dsui_0524 0.79 -0.5
532,077 - Dsui_0524 0.84 -0.3
532,167 + -0.9
532,173 + -0.2
532,175 - -1.3
532,185 - -0.3
532,213 - -0.3
532,218 + -1.3
532,218 - -1.3
532,248 + Dsui_0525 0.11 +0.7
532,298 + Dsui_0525 0.21 -0.3
532,312 + Dsui_0525 0.24 -0.9
532,371 + Dsui_0525 0.37 +0.7
532,371 + Dsui_0525 0.37 +0.7
532,429 + Dsui_0525 0.49 -0.9
532,453 + Dsui_0525 0.54 -2.1
532,646 + +0.7
532,658 + +0.7
532,678 - -0.2
532,686 - -0.9
532,736 + +0.7
532,844 + -0.3
532,978 + +0.7
533,028 + Dsui_0527 0.22 +0.7
533,068 + Dsui_0527 0.34 -1.3
533,068 + Dsui_0527 0.34 -0.9
533,147 + Dsui_0527 0.58 +0.7
533,152 + Dsui_0527 0.59 +0.7
533,155 - Dsui_0527 0.60 -1.1
533,307 - Dsui_0528 0.12 -0.5
533,489 - +0.0
533,520 + -0.9
533,526 + -0.9
533,526 - -0.3
533,534 - +0.7
533,724 - -1.3
533,738 + -0.4
533,855 + -0.6
533,962 + +0.6
533,970 - -0.3
533,977 - +0.7
534,008 + -0.1
534,260 - +0.7
534,279 + Dsui_0529 0.16 -0.6

Or see this region's nucleotide sequence