Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0422 and Dsui_0423 are separated by 50 nucleotides Dsui_0423 and Dsui_0424 are separated by 213 nucleotides
Dsui_0422: Dsui_0422 - thiamine biosynthesis protein ThiC, at 424,450 to 426,366
_0422
Dsui_0423: Dsui_0423 - putative permease, at 426,417 to 427,475
_0423
Dsui_0424: Dsui_0424 - phosphoketolase, at 427,689 to 430,109
_0424
Position (kb) 426
427
428 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 426.433 kb on + strand at 426.496 kb on - strand at 426.566 kb on - strand, within Dsui_0423 at 426.596 kb on + strand, within Dsui_0423 at 426.691 kb on - strand, within Dsui_0423 at 426.700 kb on + strand at 426.737 kb on + strand at 426.750 kb on - strand, within Dsui_0423 at 426.753 kb on + strand, within Dsui_0423 at 426.756 kb on - strand, within Dsui_0423 at 426.845 kb on - strand, within Dsui_0423 at 426.850 kb on - strand, within Dsui_0423 at 426.917 kb on - strand, within Dsui_0423 at 427.006 kb on - strand, within Dsui_0423 at 427.067 kb on - strand, within Dsui_0423 at 427.091 kb on + strand, within Dsui_0423 at 427.184 kb on - strand, within Dsui_0423 at 427.282 kb on - strand, within Dsui_0423 at 427.543 kb on + strand at 427.543 kb on + strand at 427.828 kb on + strand at 427.908 kb on + strand at 427.931 kb on - strand, within Dsui_0424 at 428.319 kb on - strand, within Dsui_0424 at 428.324 kb on - strand, within Dsui_0424 at 428.341 kb on - strand at 428.454 kb on + strand, within Dsui_0424 at 428.459 kb on + strand, within Dsui_0424
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 426,433 + -2.9 426,496 - -4.8 426,566 - Dsui_0423 0.14 -5.3 426,596 + Dsui_0423 0.17 -0.9 426,691 - Dsui_0423 0.26 -3.7 426,700 + +0.7 426,737 + +0.7 426,750 - Dsui_0423 0.31 -6.6 426,753 + Dsui_0423 0.32 -0.3 426,756 - Dsui_0423 0.32 -5.4 426,845 - Dsui_0423 0.40 -6.4 426,850 - Dsui_0423 0.41 -3.8 426,917 - Dsui_0423 0.47 -3.6 427,006 - Dsui_0423 0.56 -4.0 427,067 - Dsui_0423 0.61 -2.5 427,091 + Dsui_0423 0.64 +0.7 427,184 - Dsui_0423 0.72 -4.0 427,282 - Dsui_0423 0.82 -2.5 427,543 + +0.7 427,543 + +0.7 427,828 + +0.1 427,908 + -0.6 427,931 - Dsui_0424 0.10 -1.6 428,319 - Dsui_0424 0.26 -0.9 428,324 - Dsui_0424 0.26 -0.3 428,341 - -0.3 428,454 + Dsui_0424 0.32 -0.3 428,459 + Dsui_0424 0.32 -0.5
Or see this region's nucleotide sequence