Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0315 and Dsui_0316 are separated by 92 nucleotides Dsui_0316 and Dsui_0317 are separated by 170 nucleotides Dsui_0317 and Dsui_0318 are separated by 17 nucleotides
Dsui_0315: Dsui_0315 - Protein of unknown function (DUF2802), at 317,103 to 317,657
_0315
Dsui_0316: Dsui_0316 - hypothetical protein, at 317,750 to 318,253
_0316
Dsui_0317: Dsui_0317 - acetyl-CoA acetyltransferase, at 318,424 to 319,623
_0317
Dsui_0318: Dsui_0318 - 3-hydroxyacyl-CoA dehydrogenase, at 319,641 to 322,028
_0318
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 317.427 kb on + strand at 317.427 kb on + strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.435 kb on - strand, within Dsui_0315 at 317.616 kb on - strand at 317.633 kb on + strand at 317.745 kb on - strand at 317.747 kb on + strand at 317.806 kb on + strand, within Dsui_0316 at 317.821 kb on - strand at 317.821 kb on - strand, within Dsui_0316 at 317.822 kb on - strand, within Dsui_0316 at 317.850 kb on + strand, within Dsui_0316 at 317.961 kb on - strand, within Dsui_0316 at 318.265 kb on + strand at 318.339 kb on + strand at 318.339 kb on + strand at 318.347 kb on - strand at 318.390 kb on + strand at 318.439 kb on - strand at 318.439 kb on - strand at 318.449 kb on - strand at 318.623 kb on - strand, within Dsui_0317 at 318.708 kb on - strand, within Dsui_0317 at 318.798 kb on + strand, within Dsui_0317 at 318.917 kb on + strand, within Dsui_0317 at 318.995 kb on + strand, within Dsui_0317 at 319.032 kb on + strand, within Dsui_0317 at 319.033 kb on - strand, within Dsui_0317 at 319.034 kb on - strand, within Dsui_0317 at 319.083 kb on + strand at 319.135 kb on - strand, within Dsui_0317 at 319.137 kb on + strand, within Dsui_0317 at 319.140 kb on - strand, within Dsui_0317 at 319.209 kb on + strand, within Dsui_0317 at 319.237 kb on - strand, within Dsui_0317 at 319.283 kb on - strand, within Dsui_0317 at 319.285 kb on + strand at 319.319 kb on + strand, within Dsui_0317 at 319.401 kb on - strand, within Dsui_0317 at 319.476 kb on + strand, within Dsui_0317 at 319.544 kb on + strand at 319.561 kb on - strand at 319.595 kb on + strand at 319.688 kb on - strand at 319.694 kb on - strand at 319.694 kb on - strand at 319.702 kb on + strand at 319.702 kb on + strand at 319.702 kb on + strand at 319.762 kb on + strand at 319.780 kb on - strand at 319.858 kb on - strand at 319.966 kb on - strand, within Dsui_0318 at 319.986 kb on + strand, within Dsui_0318 at 320.029 kb on + strand, within Dsui_0318 at 320.061 kb on - strand, within Dsui_0318 at 320.079 kb on + strand, within Dsui_0318 at 320.111 kb on - strand, within Dsui_0318 at 320.191 kb on - strand, within Dsui_0318 at 320.208 kb on - strand, within Dsui_0318 at 320.289 kb on - strand, within Dsui_0318 at 320.385 kb on - strand, within Dsui_0318 at 320.394 kb on + strand, within Dsui_0318 at 320.402 kb on - strand, within Dsui_0318 at 320.531 kb on + strand, within Dsui_0318 at 320.531 kb on + strand, within Dsui_0318 at 320.539 kb on - strand, within Dsui_0318
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 317,427 + +0.7 317,427 + Dsui_0315 0.58 -0.9 317,435 - Dsui_0315 0.60 -0.6 317,435 - Dsui_0315 0.60 -0.0 317,435 - Dsui_0315 0.60 -0.7 317,435 - Dsui_0315 0.60 -0.5 317,616 - -0.5 317,633 + +0.7 317,745 - -1.9 317,747 + +0.7 317,806 + Dsui_0316 0.11 +0.7 317,821 - +0.7 317,821 - Dsui_0316 0.14 -0.5 317,822 - Dsui_0316 0.14 -0.3 317,850 + Dsui_0316 0.20 -0.9 317,961 - Dsui_0316 0.42 +2.3 318,265 + -0.3 318,339 + -0.3 318,339 + +0.7 318,347 - -0.3 318,390 + +0.7 318,439 - +0.4 318,439 - -1.1 318,449 - -0.5 318,623 - Dsui_0317 0.17 -2.3 318,708 - Dsui_0317 0.24 +0.0 318,798 + Dsui_0317 0.31 -0.9 318,917 + Dsui_0317 0.41 -1.3 318,995 + Dsui_0317 0.48 -0.9 319,032 + Dsui_0317 0.51 -1.6 319,033 - Dsui_0317 0.51 -2.3 319,034 - Dsui_0317 0.51 +0.1 319,083 + +0.7 319,135 - Dsui_0317 0.59 -0.4 319,137 + Dsui_0317 0.59 -2.3 319,140 - Dsui_0317 0.60 -2.2 319,209 + Dsui_0317 0.65 +0.7 319,237 - Dsui_0317 0.68 -0.3 319,283 - Dsui_0317 0.72 -0.3 319,285 + +0.7 319,319 + Dsui_0317 0.75 -2.3 319,401 - Dsui_0317 0.81 -0.1 319,476 + Dsui_0317 0.88 -0.9 319,544 + -1.3 319,561 - -1.3 319,595 + -0.9 319,688 - -0.9 319,694 - +0.7 319,694 - +0.7 319,702 + +0.7 319,702 + -0.3 319,702 + -0.9 319,762 + +0.7 319,780 - -0.1 319,858 - -1.3 319,966 - Dsui_0318 0.14 -0.5 319,986 + Dsui_0318 0.14 +0.7 320,029 + Dsui_0318 0.16 +0.7 320,061 - Dsui_0318 0.18 -0.3 320,079 + Dsui_0318 0.18 +0.7 320,111 - Dsui_0318 0.20 +0.5 320,191 - Dsui_0318 0.23 -1.9 320,208 - Dsui_0318 0.24 -1.3 320,289 - Dsui_0318 0.27 +0.2 320,385 - Dsui_0318 0.31 -0.4 320,394 + Dsui_0318 0.32 -1.9 320,402 - Dsui_0318 0.32 -0.7 320,531 + Dsui_0318 0.37 -0.3 320,531 + Dsui_0318 0.37 -0.9 320,539 - Dsui_0318 0.38 +0.0
Or see this region's nucleotide sequence