Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0269 and Dsui_0270 are separated by 8 nucleotides Dsui_0270 and Dsui_0271 are separated by 77 nucleotides Dsui_0271 and Dsui_0272 overlap by 4 nucleotides
Dsui_0269: Dsui_0269 - ABC-type multidrug transport system, permease component, at 270,523 to 271,659
_0269
Dsui_0270: Dsui_0270 - transcriptional regulator, at 271,668 to 272,336
_0270
Dsui_0271: Dsui_0271 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 272,414 to 273,121
_0271
Dsui_0272: Dsui_0272 - osmosensitive K+ channel histidine kinase, at 273,118 to 275,814
_0272
Position (kb)
272
273
274 Strain fitness (log2 ratio)
-2
-1
0
1 at 271.529 kb on - strand, within Dsui_0269 at 271.653 kb on + strand at 271.661 kb on - strand at 271.844 kb on - strand, within Dsui_0270 at 272.039 kb on + strand, within Dsui_0270 at 272.039 kb on + strand, within Dsui_0270 at 272.047 kb on - strand, within Dsui_0270 at 272.167 kb on + strand, within Dsui_0270 at 272.226 kb on + strand, within Dsui_0270 at 272.478 kb on + strand at 272.502 kb on + strand at 272.751 kb on + strand at 272.830 kb on + strand, within Dsui_0271 at 272.988 kb on - strand, within Dsui_0271 at 273.012 kb on + strand, within Dsui_0271 at 273.012 kb on + strand, within Dsui_0271 at 273.020 kb on - strand, within Dsui_0271 at 273.034 kb on - strand, within Dsui_0271 at 273.034 kb on - strand, within Dsui_0271 at 273.402 kb on + strand, within Dsui_0272 at 273.420 kb on - strand, within Dsui_0272 at 273.459 kb on - strand, within Dsui_0272 at 273.532 kb on + strand at 273.540 kb on - strand at 273.585 kb on - strand, within Dsui_0272 at 273.607 kb on + strand at 273.615 kb on - strand, within Dsui_0272 at 273.729 kb on + strand at 273.799 kb on - strand, within Dsui_0272 at 273.842 kb on + strand, within Dsui_0272 at 273.999 kb on - strand, within Dsui_0272 at 274.014 kb on - strand, within Dsui_0272
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 271,529 - Dsui_0269 0.88 +0.7 271,653 + -0.9 271,661 - +0.7 271,844 - Dsui_0270 0.26 -1.3 272,039 + Dsui_0270 0.55 -0.5 272,039 + Dsui_0270 0.55 -0.3 272,047 - Dsui_0270 0.57 +0.7 272,167 + Dsui_0270 0.75 -1.6 272,226 + Dsui_0270 0.83 -0.7 272,478 + -0.9 272,502 + -0.3 272,751 + +0.7 272,830 + Dsui_0271 0.59 -1.3 272,988 - Dsui_0271 0.81 -2.1 273,012 + Dsui_0271 0.84 -0.3 273,012 + Dsui_0271 0.84 +0.7 273,020 - Dsui_0271 0.86 +1.7 273,034 - Dsui_0271 0.88 -1.3 273,034 - Dsui_0271 0.88 -1.3 273,402 + Dsui_0272 0.11 -0.9 273,420 - Dsui_0272 0.11 -1.2 273,459 - Dsui_0272 0.13 -0.6 273,532 + +0.7 273,540 - +0.7 273,585 - Dsui_0272 0.17 +0.7 273,607 + -0.3 273,615 - Dsui_0272 0.18 -2.3 273,729 + +0.7 273,799 - Dsui_0272 0.25 +0.7 273,842 + Dsui_0272 0.27 -0.9 273,999 - Dsui_0272 0.33 -0.3 274,014 - Dsui_0272 0.33 -2.3
Or see this region's nucleotide sequence