Experiment: ALP with sodium fluoride 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0014 and Dsui_0015 are separated by 134 nucleotides Dsui_0015 and Dsui_0016 are separated by 39 nucleotides Dsui_0016 and Dsui_0017 are separated by 139 nucleotides Dsui_0017 and Dsui_0018 overlap by 1 nucleotides
Dsui_0014: Dsui_0014 - putative membrane protein, at 12,763 to 13,377
_0014
Dsui_0015: Dsui_0015 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 13,512 to 13,943
_0015
Dsui_0016: Dsui_0016 - transcriptional regulator, at 13,983 to 14,891
_0016
Dsui_0017: Dsui_0017 - 2-haloalkanoic acid dehalogenase, type II, at 15,031 to 15,720
_0017
Dsui_0018: Dsui_0018 - putative permease, at 15,720 to 16,505
_0018
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 13.011 kb on + strand, within Dsui_0014 at 13.040 kb on + strand, within Dsui_0014 at 13.040 kb on + strand, within Dsui_0014 at 13.048 kb on - strand at 13.048 kb on - strand, within Dsui_0014 at 13.127 kb on - strand at 13.223 kb on - strand, within Dsui_0014 at 13.225 kb on - strand at 13.238 kb on + strand, within Dsui_0014 at 13.253 kb on + strand, within Dsui_0014 at 13.289 kb on + strand, within Dsui_0014 at 13.297 kb on - strand, within Dsui_0014 at 13.308 kb on - strand, within Dsui_0014 at 13.357 kb on - strand at 13.457 kb on + strand at 13.510 kb on - strand at 13.522 kb on - strand at 13.525 kb on + strand at 13.525 kb on + strand at 13.598 kb on - strand, within Dsui_0015 at 13.609 kb on + strand, within Dsui_0015 at 13.678 kb on + strand, within Dsui_0015 at 13.678 kb on + strand at 13.696 kb on + strand at 13.786 kb on + strand, within Dsui_0015 at 13.786 kb on - strand at 13.853 kb on - strand at 13.935 kb on + strand at 14.245 kb on - strand, within Dsui_0016 at 14.266 kb on - strand, within Dsui_0016 at 14.346 kb on + strand at 14.370 kb on - strand, within Dsui_0016 at 14.396 kb on + strand, within Dsui_0016 at 14.423 kb on - strand, within Dsui_0016 at 14.521 kb on - strand, within Dsui_0016 at 14.539 kb on - strand, within Dsui_0016 at 14.606 kb on + strand, within Dsui_0016 at 14.673 kb on + strand, within Dsui_0016 at 14.708 kb on + strand, within Dsui_0016 at 14.769 kb on + strand at 14.776 kb on - strand, within Dsui_0016 at 14.776 kb on - strand, within Dsui_0016 at 14.866 kb on + strand at 14.866 kb on + strand at 15.009 kb on + strand at 15.017 kb on - strand at 15.046 kb on - strand at 15.048 kb on + strand at 15.092 kb on - strand at 15.215 kb on - strand, within Dsui_0017 at 15.218 kb on + strand, within Dsui_0017 at 15.239 kb on + strand, within Dsui_0017 at 15.246 kb on - strand, within Dsui_0017 at 15.299 kb on - strand at 15.319 kb on + strand, within Dsui_0017 at 15.365 kb on + strand, within Dsui_0017 at 15.365 kb on + strand, within Dsui_0017 at 15.365 kb on + strand, within Dsui_0017 at 15.365 kb on + strand, within Dsui_0017 at 15.373 kb on - strand, within Dsui_0017 at 15.373 kb on - strand, within Dsui_0017 at 15.384 kb on - strand, within Dsui_0017 at 15.398 kb on + strand, within Dsui_0017 at 15.510 kb on - strand, within Dsui_0017 at 15.513 kb on + strand, within Dsui_0017 at 15.535 kb on - strand, within Dsui_0017 at 15.553 kb on - strand, within Dsui_0017 at 15.654 kb on + strand at 15.667 kb on - strand at 15.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with sodium fluoride 30 mM remove 13,011 + Dsui_0014 0.40 -1.5 13,040 + Dsui_0014 0.45 -1.2 13,040 + Dsui_0014 0.45 -1.0 13,048 - -0.3 13,048 - Dsui_0014 0.46 -1.3 13,127 - +0.7 13,223 - Dsui_0014 0.75 +0.7 13,225 - +0.7 13,238 + Dsui_0014 0.77 -1.3 13,253 + Dsui_0014 0.80 +0.0 13,289 + Dsui_0014 0.86 -0.5 13,297 - Dsui_0014 0.87 -1.6 13,308 - Dsui_0014 0.89 -0.3 13,357 - -0.3 13,457 + -0.3 13,510 - +0.7 13,522 - -0.9 13,525 + -2.3 13,525 + -0.3 13,598 - Dsui_0015 0.20 -0.3 13,609 + Dsui_0015 0.22 -0.9 13,678 + Dsui_0015 0.38 -1.3 13,678 + +0.7 13,696 + +0.7 13,786 + Dsui_0015 0.63 -0.9 13,786 - -0.3 13,853 - +0.7 13,935 + -1.3 14,245 - Dsui_0016 0.29 -0.4 14,266 - Dsui_0016 0.31 +0.2 14,346 + -0.3 14,370 - Dsui_0016 0.43 -0.2 14,396 + Dsui_0016 0.45 -1.3 14,423 - Dsui_0016 0.48 -0.4 14,521 - Dsui_0016 0.59 -0.8 14,539 - Dsui_0016 0.61 -0.4 14,606 + Dsui_0016 0.69 -0.3 14,673 + Dsui_0016 0.76 -1.6 14,708 + Dsui_0016 0.80 -0.3 14,769 + +0.7 14,776 - Dsui_0016 0.87 -0.5 14,776 - Dsui_0016 0.87 -0.5 14,866 + -0.3 14,866 + +0.7 15,009 + -1.3 15,017 - +0.7 15,046 - +0.7 15,048 + +1.7 15,092 - +0.7 15,215 - Dsui_0017 0.27 +0.7 15,218 + Dsui_0017 0.27 -0.3 15,239 + Dsui_0017 0.30 -0.1 15,246 - Dsui_0017 0.31 +0.7 15,299 - +0.7 15,319 + Dsui_0017 0.42 -0.2 15,365 + Dsui_0017 0.48 -0.1 15,365 + Dsui_0017 0.48 -0.3 15,365 + Dsui_0017 0.48 -0.2 15,365 + Dsui_0017 0.48 -0.1 15,373 - Dsui_0017 0.50 +0.7 15,373 - Dsui_0017 0.50 -1.9 15,384 - Dsui_0017 0.51 +0.7 15,398 + Dsui_0017 0.53 -0.4 15,510 - Dsui_0017 0.69 -0.3 15,513 + Dsui_0017 0.70 -0.4 15,535 - Dsui_0017 0.73 +0.7 15,553 - Dsui_0017 0.76 -1.9 15,654 + -0.8 15,667 - -0.3 15,692 - -0.3
Or see this region's nucleotide sequence