Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24210

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24205 and BWI76_RS24210 are separated by 10 nucleotidesBWI76_RS24210 and BWI76_RS24215 are separated by 79 nucleotides BWI76_RS24205: BWI76_RS24205 - cystathionine beta-synthase, at 5,045,495 to 5,046,865 _RS24205 BWI76_RS24210: BWI76_RS24210 - cystathionine gamma-lyase, at 5,046,876 to 5,048,021 _RS24210 BWI76_RS24215: BWI76_RS24215 - LysR family transcriptional regulator, at 5,048,101 to 5,049,000 _RS24215 Position (kb) 5046 5047 5048 5049Strain fitness (log2 ratio) -2 -1 0 1at 5046.084 kb on - strand, within BWI76_RS24205at 5046.289 kb on + strand, within BWI76_RS24205at 5046.307 kb on + strand, within BWI76_RS24205at 5046.328 kb on + strand, within BWI76_RS24205at 5046.655 kb on + strand, within BWI76_RS24205at 5046.720 kb on - strand, within BWI76_RS24205at 5046.965 kb on - strandat 5047.117 kb on + strand, within BWI76_RS24210at 5047.185 kb on - strand, within BWI76_RS24210at 5047.195 kb on - strand, within BWI76_RS24210at 5047.503 kb on - strand, within BWI76_RS24210at 5047.596 kb on - strand, within BWI76_RS24210at 5047.695 kb on + strand, within BWI76_RS24210at 5047.816 kb on + strand, within BWI76_RS24210at 5047.850 kb on + strand, within BWI76_RS24210at 5048.010 kb on - strandat 5048.098 kb on + strandat 5048.098 kb on + strandat 5048.219 kb on + strand, within BWI76_RS24215at 5048.249 kb on - strand, within BWI76_RS24215at 5048.352 kb on - strand, within BWI76_RS24215at 5048.645 kb on + strand, within BWI76_RS24215at 5048.751 kb on + strand, within BWI76_RS24215at 5048.872 kb on - strand, within BWI76_RS24215at 5049.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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5,046,084 - BWI76_RS24205 0.43 -0.6
5,046,289 + BWI76_RS24205 0.58 -1.9
5,046,307 + BWI76_RS24205 0.59 -1.5
5,046,328 + BWI76_RS24205 0.61 -0.4
5,046,655 + BWI76_RS24205 0.85 +1.4
5,046,720 - BWI76_RS24205 0.89 -0.3
5,046,965 - -0.8
5,047,117 + BWI76_RS24210 0.21 -1.0
5,047,185 - BWI76_RS24210 0.27 -0.5
5,047,195 - BWI76_RS24210 0.28 -0.2
5,047,503 - BWI76_RS24210 0.55 +0.2
5,047,596 - BWI76_RS24210 0.63 +0.5
5,047,695 + BWI76_RS24210 0.71 -0.6
5,047,816 + BWI76_RS24210 0.82 +0.8
5,047,850 + BWI76_RS24210 0.85 -1.8
5,048,010 - -0.5
5,048,098 + +0.6
5,048,098 + +0.5
5,048,219 + BWI76_RS24215 0.13 +0.3
5,048,249 - BWI76_RS24215 0.16 -1.0
5,048,352 - BWI76_RS24215 0.28 -0.4
5,048,645 + BWI76_RS24215 0.60 -0.1
5,048,751 + BWI76_RS24215 0.72 -0.4
5,048,872 - BWI76_RS24215 0.86 +0.7
5,049,017 - -0.3

Or see this region's nucleotide sequence