Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19185

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19180 and BWI76_RS19185 overlap by 20 nucleotidesBWI76_RS19185 and BWI76_RS19190 overlap by 1 nucleotidesBWI76_RS19190 and BWI76_RS19195 overlap by 4 nucleotides BWI76_RS19180: BWI76_RS19180 - diguanylate cyclase, at 3,991,954 to 3,993,468 _RS19180 BWI76_RS19185: BWI76_RS19185 - ABC transporter ATP-binding protein, at 3,993,449 to 3,994,483 _RS19185 BWI76_RS19190: BWI76_RS19190 - oligopeptide/dipeptide ABC transporter ATPase, at 3,994,483 to 3,995,463 _RS19190 BWI76_RS19195: BWI76_RS19195 - nickel ABC transporter permease, at 3,995,460 to 3,996,306 _RS19195 Position (kb) 3993 3994 3995Strain fitness (log2 ratio) -2 -1 0 1at 3992.459 kb on + strand, within BWI76_RS19180at 3992.599 kb on + strand, within BWI76_RS19180at 3992.624 kb on - strand, within BWI76_RS19180at 3992.758 kb on - strand, within BWI76_RS19180at 3993.039 kb on + strand, within BWI76_RS19180at 3993.240 kb on - strand, within BWI76_RS19180at 3993.296 kb on - strand, within BWI76_RS19180at 3993.597 kb on + strand, within BWI76_RS19185at 3993.731 kb on - strand, within BWI76_RS19185at 3993.743 kb on + strand, within BWI76_RS19185at 3993.890 kb on + strand, within BWI76_RS19185at 3993.915 kb on - strand, within BWI76_RS19185at 3994.031 kb on + strand, within BWI76_RS19185at 3994.236 kb on + strand, within BWI76_RS19185at 3994.294 kb on + strand, within BWI76_RS19185at 3994.373 kb on + strand, within BWI76_RS19185at 3994.438 kb on + strandat 3994.473 kb on + strandat 3994.625 kb on + strand, within BWI76_RS19190at 3994.729 kb on - strand, within BWI76_RS19190at 3994.914 kb on + strand, within BWI76_RS19190at 3995.142 kb on + strand, within BWI76_RS19190at 3995.398 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,992,459 + BWI76_RS19180 0.33 +1.2
3,992,599 + BWI76_RS19180 0.43 -0.8
3,992,624 - BWI76_RS19180 0.44 +0.3
3,992,758 - BWI76_RS19180 0.53 +0.6
3,993,039 + BWI76_RS19180 0.72 -0.6
3,993,240 - BWI76_RS19180 0.85 -0.3
3,993,296 - BWI76_RS19180 0.89 -0.6
3,993,597 + BWI76_RS19185 0.14 -2.2
3,993,731 - BWI76_RS19185 0.27 -0.4
3,993,743 + BWI76_RS19185 0.28 -0.3
3,993,890 + BWI76_RS19185 0.43 -0.6
3,993,915 - BWI76_RS19185 0.45 +0.6
3,994,031 + BWI76_RS19185 0.56 -1.1
3,994,236 + BWI76_RS19185 0.76 -0.4
3,994,294 + BWI76_RS19185 0.82 -0.3
3,994,373 + BWI76_RS19185 0.89 +0.2
3,994,438 + -1.1
3,994,473 + +0.9
3,994,625 + BWI76_RS19190 0.14 -0.5
3,994,729 - BWI76_RS19190 0.25 +0.1
3,994,914 + BWI76_RS19190 0.44 +0.2
3,995,142 + BWI76_RS19190 0.67 +0.5
3,995,398 - -0.5

Or see this region's nucleotide sequence