Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17240

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17235 and BWI76_RS17240 are separated by 88 nucleotidesBWI76_RS17240 and BWI76_RS17245 are separated by 747 nucleotides BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582 _RS17235 BWI76_RS17240: BWI76_RS17240 - oligopeptide ABC transporter substrate-binding protein OppA, at 3,570,671 to 3,572,302 _RS17240 BWI76_RS17245: BWI76_RS17245 - hypothetical protein, at 3,573,050 to 3,573,697 _RS17245 Position (kb) 3570 3571 3572 3573Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3569.759 kb on - strand, within BWI76_RS17235at 3569.917 kb on + strand, within BWI76_RS17235at 3569.970 kb on + strand, within BWI76_RS17235at 3569.985 kb on - strand, within BWI76_RS17235at 3570.185 kb on - strand, within BWI76_RS17235at 3570.250 kb on + strand, within BWI76_RS17235at 3570.312 kb on - strand, within BWI76_RS17235at 3570.367 kb on - strand, within BWI76_RS17235at 3570.462 kb on + strand, within BWI76_RS17235at 3570.492 kb on + strandat 3570.492 kb on + strandat 3570.549 kb on + strandat 3570.549 kb on + strandat 3570.549 kb on + strandat 3570.584 kb on + strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.604 kb on + strandat 3570.645 kb on + strandat 3570.650 kb on + strandat 3570.658 kb on - strandat 3570.705 kb on + strandat 3570.713 kb on - strandat 3571.125 kb on + strand, within BWI76_RS17240at 3571.133 kb on - strand, within BWI76_RS17240at 3571.138 kb on + strand, within BWI76_RS17240at 3571.146 kb on - strand, within BWI76_RS17240at 3571.260 kb on + strand, within BWI76_RS17240at 3571.343 kb on + strand, within BWI76_RS17240at 3571.487 kb on + strand, within BWI76_RS17240at 3571.601 kb on + strand, within BWI76_RS17240at 3571.618 kb on - strand, within BWI76_RS17240at 3571.692 kb on - strand, within BWI76_RS17240at 3571.949 kb on + strand, within BWI76_RS17240at 3571.982 kb on + strand, within BWI76_RS17240at 3572.200 kb on + strandat 3572.376 kb on + strandat 3572.383 kb on + strandat 3572.384 kb on - strandat 3572.384 kb on - strandat 3572.384 kb on - strandat 3572.384 kb on - strandat 3572.384 kb on - strandat 3572.391 kb on - strandat 3572.402 kb on - strandat 3572.648 kb on - strandat 3572.699 kb on + strandat 3572.852 kb on - strandat 3573.076 kb on + strandat 3573.124 kb on + strand, within BWI76_RS17245at 3573.187 kb on - strand, within BWI76_RS17245at 3573.261 kb on + strand, within BWI76_RS17245at 3573.281 kb on + strand, within BWI76_RS17245

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,569,759 - BWI76_RS17235 0.11 -2.1
3,569,917 + BWI76_RS17235 0.28 +0.7
3,569,970 + BWI76_RS17235 0.33 +2.4
3,569,985 - BWI76_RS17235 0.35 +0.4
3,570,185 - BWI76_RS17235 0.57 -0.6
3,570,250 + BWI76_RS17235 0.64 -0.2
3,570,312 - BWI76_RS17235 0.71 -0.2
3,570,367 - BWI76_RS17235 0.77 -1.7
3,570,462 + BWI76_RS17235 0.87 +0.4
3,570,492 + +0.1
3,570,492 + +0.3
3,570,549 + +0.6
3,570,549 + +0.5
3,570,549 + +0.2
3,570,584 + +1.3
3,570,600 - +0.4
3,570,600 - +0.2
3,570,600 - +0.5
3,570,600 - +0.4
3,570,604 + +0.1
3,570,645 + +0.2
3,570,650 + +0.1
3,570,658 - +0.3
3,570,705 + -0.1
3,570,713 - +0.1
3,571,125 + BWI76_RS17240 0.28 -0.5
3,571,133 - BWI76_RS17240 0.28 +0.1
3,571,138 + BWI76_RS17240 0.29 +0.2
3,571,146 - BWI76_RS17240 0.29 -2.9
3,571,260 + BWI76_RS17240 0.36 +0.4
3,571,343 + BWI76_RS17240 0.41 -0.3
3,571,487 + BWI76_RS17240 0.50 +0.2
3,571,601 + BWI76_RS17240 0.57 +0.2
3,571,618 - BWI76_RS17240 0.58 -1.4
3,571,692 - BWI76_RS17240 0.63 -0.6
3,571,949 + BWI76_RS17240 0.78 +0.2
3,571,982 + BWI76_RS17240 0.80 +0.7
3,572,200 + -0.3
3,572,376 + -1.4
3,572,383 + +0.2
3,572,384 - -0.7
3,572,384 - -1.0
3,572,384 - +1.2
3,572,384 - +0.9
3,572,384 - -1.0
3,572,391 - +0.4
3,572,402 - -1.1
3,572,648 - +1.5
3,572,699 + -1.8
3,572,852 - -0.7
3,573,076 + -0.4
3,573,124 + BWI76_RS17245 0.11 +0.4
3,573,187 - BWI76_RS17245 0.21 +0.1
3,573,261 + BWI76_RS17245 0.33 +0.1
3,573,281 + BWI76_RS17245 0.36 +0.2

Or see this region's nucleotide sequence