Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17235 and BWI76_RS17240 are separated by 88 nucleotides BWI76_RS17240 and BWI76_RS17245 are separated by 747 nucleotides
BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582
_RS17235
BWI76_RS17240: BWI76_RS17240 - oligopeptide ABC transporter substrate-binding protein OppA, at 3,570,671 to 3,572,302
_RS17240
BWI76_RS17245: BWI76_RS17245 - hypothetical protein, at 3,573,050 to 3,573,697
_RS17245
Position (kb)
3570
3571
3572
3573 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3569.759 kb on - strand, within BWI76_RS17235 at 3569.917 kb on + strand, within BWI76_RS17235 at 3569.970 kb on + strand, within BWI76_RS17235 at 3569.985 kb on - strand, within BWI76_RS17235 at 3570.185 kb on - strand, within BWI76_RS17235 at 3570.250 kb on + strand, within BWI76_RS17235 at 3570.312 kb on - strand, within BWI76_RS17235 at 3570.367 kb on - strand, within BWI76_RS17235 at 3570.462 kb on + strand, within BWI76_RS17235 at 3570.492 kb on + strand at 3570.492 kb on + strand at 3570.549 kb on + strand at 3570.549 kb on + strand at 3570.549 kb on + strand at 3570.584 kb on + strand at 3570.600 kb on - strand at 3570.600 kb on - strand at 3570.600 kb on - strand at 3570.600 kb on - strand at 3570.604 kb on + strand at 3570.645 kb on + strand at 3570.650 kb on + strand at 3570.658 kb on - strand at 3570.705 kb on + strand at 3570.713 kb on - strand at 3571.125 kb on + strand, within BWI76_RS17240 at 3571.133 kb on - strand, within BWI76_RS17240 at 3571.138 kb on + strand, within BWI76_RS17240 at 3571.146 kb on - strand, within BWI76_RS17240 at 3571.260 kb on + strand, within BWI76_RS17240 at 3571.343 kb on + strand, within BWI76_RS17240 at 3571.487 kb on + strand, within BWI76_RS17240 at 3571.601 kb on + strand, within BWI76_RS17240 at 3571.618 kb on - strand, within BWI76_RS17240 at 3571.692 kb on - strand, within BWI76_RS17240 at 3571.949 kb on + strand, within BWI76_RS17240 at 3571.982 kb on + strand, within BWI76_RS17240 at 3572.200 kb on + strand at 3572.376 kb on + strand at 3572.383 kb on + strand at 3572.384 kb on - strand at 3572.384 kb on - strand at 3572.384 kb on - strand at 3572.384 kb on - strand at 3572.384 kb on - strand at 3572.391 kb on - strand at 3572.402 kb on - strand at 3572.648 kb on - strand at 3572.699 kb on + strand at 3572.852 kb on - strand at 3573.076 kb on + strand at 3573.124 kb on + strand, within BWI76_RS17245 at 3573.187 kb on - strand, within BWI76_RS17245 at 3573.261 kb on + strand, within BWI76_RS17245 at 3573.281 kb on + strand, within BWI76_RS17245
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,569,759 - BWI76_RS17235 0.11 -2.1 3,569,917 + BWI76_RS17235 0.28 +0.7 3,569,970 + BWI76_RS17235 0.33 +2.4 3,569,985 - BWI76_RS17235 0.35 +0.4 3,570,185 - BWI76_RS17235 0.57 -0.6 3,570,250 + BWI76_RS17235 0.64 -0.2 3,570,312 - BWI76_RS17235 0.71 -0.2 3,570,367 - BWI76_RS17235 0.77 -1.7 3,570,462 + BWI76_RS17235 0.87 +0.4 3,570,492 + +0.1 3,570,492 + +0.3 3,570,549 + +0.6 3,570,549 + +0.5 3,570,549 + +0.2 3,570,584 + +1.3 3,570,600 - +0.4 3,570,600 - +0.2 3,570,600 - +0.5 3,570,600 - +0.4 3,570,604 + +0.1 3,570,645 + +0.2 3,570,650 + +0.1 3,570,658 - +0.3 3,570,705 + -0.1 3,570,713 - +0.1 3,571,125 + BWI76_RS17240 0.28 -0.5 3,571,133 - BWI76_RS17240 0.28 +0.1 3,571,138 + BWI76_RS17240 0.29 +0.2 3,571,146 - BWI76_RS17240 0.29 -2.9 3,571,260 + BWI76_RS17240 0.36 +0.4 3,571,343 + BWI76_RS17240 0.41 -0.3 3,571,487 + BWI76_RS17240 0.50 +0.2 3,571,601 + BWI76_RS17240 0.57 +0.2 3,571,618 - BWI76_RS17240 0.58 -1.4 3,571,692 - BWI76_RS17240 0.63 -0.6 3,571,949 + BWI76_RS17240 0.78 +0.2 3,571,982 + BWI76_RS17240 0.80 +0.7 3,572,200 + -0.3 3,572,376 + -1.4 3,572,383 + +0.2 3,572,384 - -0.7 3,572,384 - -1.0 3,572,384 - +1.2 3,572,384 - +0.9 3,572,384 - -1.0 3,572,391 - +0.4 3,572,402 - -1.1 3,572,648 - +1.5 3,572,699 + -1.8 3,572,852 - -0.7 3,573,076 + -0.4 3,573,124 + BWI76_RS17245 0.11 +0.4 3,573,187 - BWI76_RS17245 0.21 +0.1 3,573,261 + BWI76_RS17245 0.33 +0.1 3,573,281 + BWI76_RS17245 0.36 +0.2
Or see this region's nucleotide sequence