Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17230

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17225 and BWI76_RS17230 are separated by 11 nucleotidesBWI76_RS17230 and BWI76_RS17235 are separated by 14 nucleotides BWI76_RS17225: BWI76_RS17225 - oligopeptide ABC transporter ATP-binding protein OppD, at 3,567,714 to 3,568,727 _RS17225 BWI76_RS17230: BWI76_RS17230 - peptide ABC transporter permease, at 3,568,739 to 3,569,647 _RS17230 BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582 _RS17235 Position (kb) 3568 3569 3570Strain fitness (log2 ratio) -2 -1 0 1 2at 3567.778 kb on - strandat 3567.874 kb on + strand, within BWI76_RS17225at 3567.916 kb on + strand, within BWI76_RS17225at 3567.924 kb on - strand, within BWI76_RS17225at 3568.018 kb on - strand, within BWI76_RS17225at 3568.138 kb on + strand, within BWI76_RS17225at 3568.322 kb on - strand, within BWI76_RS17225at 3568.341 kb on - strand, within BWI76_RS17225at 3568.428 kb on - strand, within BWI76_RS17225at 3568.453 kb on - strand, within BWI76_RS17225at 3568.745 kb on - strandat 3568.882 kb on + strand, within BWI76_RS17230at 3569.244 kb on - strand, within BWI76_RS17230at 3569.287 kb on - strand, within BWI76_RS17230at 3569.301 kb on + strand, within BWI76_RS17230at 3569.759 kb on - strand, within BWI76_RS17235at 3569.917 kb on + strand, within BWI76_RS17235at 3569.970 kb on + strand, within BWI76_RS17235at 3569.985 kb on - strand, within BWI76_RS17235at 3570.185 kb on - strand, within BWI76_RS17235at 3570.250 kb on + strand, within BWI76_RS17235at 3570.312 kb on - strand, within BWI76_RS17235at 3570.367 kb on - strand, within BWI76_RS17235at 3570.462 kb on + strand, within BWI76_RS17235at 3570.492 kb on + strandat 3570.492 kb on + strandat 3570.549 kb on + strandat 3570.549 kb on + strandat 3570.549 kb on + strandat 3570.584 kb on + strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.604 kb on + strandat 3570.645 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
3,567,778 - +0.1
3,567,874 + BWI76_RS17225 0.16 -0.7
3,567,916 + BWI76_RS17225 0.20 +0.3
3,567,924 - BWI76_RS17225 0.21 +0.3
3,568,018 - BWI76_RS17225 0.30 +0.2
3,568,138 + BWI76_RS17225 0.42 -0.2
3,568,322 - BWI76_RS17225 0.60 -0.3
3,568,341 - BWI76_RS17225 0.62 -0.2
3,568,428 - BWI76_RS17225 0.70 -0.1
3,568,453 - BWI76_RS17225 0.73 +0.5
3,568,745 - +1.0
3,568,882 + BWI76_RS17230 0.16 +1.3
3,569,244 - BWI76_RS17230 0.56 +0.3
3,569,287 - BWI76_RS17230 0.60 +0.4
3,569,301 + BWI76_RS17230 0.62 +1.1
3,569,759 - BWI76_RS17235 0.11 -2.1
3,569,917 + BWI76_RS17235 0.28 +0.7
3,569,970 + BWI76_RS17235 0.33 +2.4
3,569,985 - BWI76_RS17235 0.35 +0.4
3,570,185 - BWI76_RS17235 0.57 -0.6
3,570,250 + BWI76_RS17235 0.64 -0.2
3,570,312 - BWI76_RS17235 0.71 -0.2
3,570,367 - BWI76_RS17235 0.77 -1.7
3,570,462 + BWI76_RS17235 0.87 +0.4
3,570,492 + +0.1
3,570,492 + +0.3
3,570,549 + +0.6
3,570,549 + +0.5
3,570,549 + +0.2
3,570,584 + +1.3
3,570,600 - +0.4
3,570,600 - +0.2
3,570,600 - +0.5
3,570,600 - +0.4
3,570,604 + +0.1
3,570,645 + +0.2

Or see this region's nucleotide sequence