Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17220 and BWI76_RS17225 overlap by 4 nucleotides BWI76_RS17225 and BWI76_RS17230 are separated by 11 nucleotides BWI76_RS17230 and BWI76_RS17235 are separated by 14 nucleotides
BWI76_RS17220: BWI76_RS17220 - oligopeptide ABC transporter ATP-binding protein OppF, at 3,566,713 to 3,567,717
_RS17220
BWI76_RS17225: BWI76_RS17225 - oligopeptide ABC transporter ATP-binding protein OppD, at 3,567,714 to 3,568,727
_RS17225
BWI76_RS17230: BWI76_RS17230 - peptide ABC transporter permease, at 3,568,739 to 3,569,647
_RS17230
BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582
_RS17235
Position (kb)
3567
3568
3569 Strain fitness (log2 ratio)
-1
0
1 at 3566.719 kb on - strand at 3566.923 kb on + strand, within BWI76_RS17220 at 3566.924 kb on - strand, within BWI76_RS17220 at 3566.943 kb on - strand, within BWI76_RS17220 at 3567.198 kb on - strand, within BWI76_RS17220 at 3567.491 kb on + strand, within BWI76_RS17220 at 3567.585 kb on + strand, within BWI76_RS17220 at 3567.778 kb on - strand at 3567.874 kb on + strand, within BWI76_RS17225 at 3567.916 kb on + strand, within BWI76_RS17225 at 3567.924 kb on - strand, within BWI76_RS17225 at 3568.018 kb on - strand, within BWI76_RS17225 at 3568.138 kb on + strand, within BWI76_RS17225 at 3568.322 kb on - strand, within BWI76_RS17225 at 3568.341 kb on - strand, within BWI76_RS17225 at 3568.428 kb on - strand, within BWI76_RS17225 at 3568.453 kb on - strand, within BWI76_RS17225 at 3568.745 kb on - strand at 3568.882 kb on + strand, within BWI76_RS17230 at 3569.244 kb on - strand, within BWI76_RS17230 at 3569.287 kb on - strand, within BWI76_RS17230 at 3569.301 kb on + strand, within BWI76_RS17230
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,566,719 - -0.2 3,566,923 + BWI76_RS17220 0.21 +0.3 3,566,924 - BWI76_RS17220 0.21 -0.3 3,566,943 - BWI76_RS17220 0.23 -0.5 3,567,198 - BWI76_RS17220 0.48 -0.7 3,567,491 + BWI76_RS17220 0.77 +0.7 3,567,585 + BWI76_RS17220 0.87 +0.2 3,567,778 - +0.1 3,567,874 + BWI76_RS17225 0.16 -0.7 3,567,916 + BWI76_RS17225 0.20 +0.3 3,567,924 - BWI76_RS17225 0.21 +0.3 3,568,018 - BWI76_RS17225 0.30 +0.2 3,568,138 + BWI76_RS17225 0.42 -0.2 3,568,322 - BWI76_RS17225 0.60 -0.3 3,568,341 - BWI76_RS17225 0.62 -0.2 3,568,428 - BWI76_RS17225 0.70 -0.1 3,568,453 - BWI76_RS17225 0.73 +0.5 3,568,745 - +1.0 3,568,882 + BWI76_RS17230 0.16 +1.3 3,569,244 - BWI76_RS17230 0.56 +0.3 3,569,287 - BWI76_RS17230 0.60 +0.4 3,569,301 + BWI76_RS17230 0.62 +1.1
Or see this region's nucleotide sequence