Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16690 and BWI76_RS16695 overlap by 4 nucleotides BWI76_RS16695 and BWI76_RS16700 overlap by 4 nucleotides BWI76_RS16700 and BWI76_RS16705 are separated by 74 nucleotides
BWI76_RS16690: BWI76_RS16690 - peptide ABC transporter permease, at 3,454,601 to 3,455,548
_RS16690
BWI76_RS16695: BWI76_RS16695 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 3,455,545 to 3,456,525
_RS16695
BWI76_RS16700: BWI76_RS16700 - ABC transporter ATP-binding protein, at 3,456,522 to 3,457,487
_RS16700
BWI76_RS16705: BWI76_RS16705 - glucose dehydrogenase, at 3,457,562 to 3,459,967
_RS16705
Position (kb)
3456
3457
3458 Strain fitness (log2 ratio)
-1
0
1 at 3455.667 kb on - strand, within BWI76_RS16695 at 3455.711 kb on - strand, within BWI76_RS16695 at 3455.942 kb on + strand at 3455.950 kb on - strand, within BWI76_RS16695 at 3456.156 kb on + strand, within BWI76_RS16695 at 3456.200 kb on - strand, within BWI76_RS16695 at 3456.226 kb on + strand, within BWI76_RS16695 at 3456.433 kb on + strand at 3456.441 kb on - strand at 3457.530 kb on - strand at 3457.580 kb on + strand at 3457.772 kb on + strand at 3457.901 kb on - strand, within BWI76_RS16705 at 3458.352 kb on + strand, within BWI76_RS16705
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 3,455,667 - BWI76_RS16695 0.12 +0.3 3,455,711 - BWI76_RS16695 0.17 -0.2 3,455,942 + +1.4 3,455,950 - BWI76_RS16695 0.41 -0.5 3,456,156 + BWI76_RS16695 0.62 -0.6 3,456,200 - BWI76_RS16695 0.67 +0.0 3,456,226 + BWI76_RS16695 0.69 -0.2 3,456,433 + -0.7 3,456,441 - -0.7 3,457,530 - -0.2 3,457,580 + -0.2 3,457,772 + +0.9 3,457,901 - BWI76_RS16705 0.14 +0.4 3,458,352 + BWI76_RS16705 0.33 -1.4
Or see this region's nucleotide sequence