Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07525 and BWI76_RS07530 are separated by 2 nucleotides BWI76_RS07530 and BWI76_RS07535 are separated by 3 nucleotides BWI76_RS07535 and BWI76_RS07540 overlap by 11 nucleotides
BWI76_RS07525: BWI76_RS07525 - ABC transporter permease, at 1,592,850 to 1,593,803
_RS07525
BWI76_RS07530: BWI76_RS07530 - binding-protein-dependent transport system inner membrane protein, at 1,593,806 to 1,594,699
_RS07530
BWI76_RS07535: BWI76_RS07535 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 1,594,703 to 1,595,746
_RS07535
BWI76_RS07540: BWI76_RS07540 - dipeptide ABC transporter ATP-binding protein DppD, at 1,595,736 to 1,596,746
_RS07540
Position (kb)
1594
1595
1596 Strain fitness (log2 ratio)
-1
0
1 at 1593.775 kb on + strand at 1593.808 kb on + strand at 1594.222 kb on + strand, within BWI76_RS07530 at 1594.316 kb on - strand, within BWI76_RS07530 at 1594.397 kb on + strand, within BWI76_RS07530 at 1594.521 kb on - strand, within BWI76_RS07530 at 1594.597 kb on + strand, within BWI76_RS07530 at 1594.808 kb on + strand, within BWI76_RS07535 at 1594.828 kb on + strand, within BWI76_RS07535 at 1594.964 kb on - strand, within BWI76_RS07535 at 1595.181 kb on - strand, within BWI76_RS07535 at 1595.470 kb on + strand, within BWI76_RS07535 at 1595.554 kb on + strand, within BWI76_RS07535 at 1595.608 kb on + strand, within BWI76_RS07535 at 1595.608 kb on + strand, within BWI76_RS07535 at 1595.783 kb on - strand at 1595.824 kb on + strand at 1595.892 kb on - strand, within BWI76_RS07540 at 1596.345 kb on + strand, within BWI76_RS07540 at 1596.422 kb on + strand, within BWI76_RS07540 at 1596.548 kb on + strand, within BWI76_RS07540 at 1596.627 kb on + strand, within BWI76_RS07540
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 1,593,775 + +0.1 1,593,808 + -0.5 1,594,222 + BWI76_RS07530 0.47 +0.9 1,594,316 - BWI76_RS07530 0.57 +0.4 1,594,397 + BWI76_RS07530 0.66 -0.2 1,594,521 - BWI76_RS07530 0.80 -1.1 1,594,597 + BWI76_RS07530 0.88 +1.0 1,594,808 + BWI76_RS07535 0.10 -0.1 1,594,828 + BWI76_RS07535 0.12 -0.7 1,594,964 - BWI76_RS07535 0.25 -0.6 1,595,181 - BWI76_RS07535 0.46 -0.8 1,595,470 + BWI76_RS07535 0.73 -0.0 1,595,554 + BWI76_RS07535 0.82 -0.7 1,595,608 + BWI76_RS07535 0.87 +0.1 1,595,608 + BWI76_RS07535 0.87 -0.5 1,595,783 - +0.6 1,595,824 + -0.3 1,595,892 - BWI76_RS07540 0.15 -0.2 1,596,345 + BWI76_RS07540 0.60 -0.2 1,596,422 + BWI76_RS07540 0.68 +0.8 1,596,548 + BWI76_RS07540 0.80 +1.1 1,596,627 + BWI76_RS07540 0.88 -1.2
Or see this region's nucleotide sequence