Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07535

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07525 and BWI76_RS07530 are separated by 2 nucleotidesBWI76_RS07530 and BWI76_RS07535 are separated by 3 nucleotidesBWI76_RS07535 and BWI76_RS07540 overlap by 11 nucleotides BWI76_RS07525: BWI76_RS07525 - ABC transporter permease, at 1,592,850 to 1,593,803 _RS07525 BWI76_RS07530: BWI76_RS07530 - binding-protein-dependent transport system inner membrane protein, at 1,593,806 to 1,594,699 _RS07530 BWI76_RS07535: BWI76_RS07535 - dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein, at 1,594,703 to 1,595,746 _RS07535 BWI76_RS07540: BWI76_RS07540 - dipeptide ABC transporter ATP-binding protein DppD, at 1,595,736 to 1,596,746 _RS07540 Position (kb) 1594 1595 1596Strain fitness (log2 ratio) -1 0 1at 1593.775 kb on + strandat 1593.808 kb on + strandat 1594.222 kb on + strand, within BWI76_RS07530at 1594.316 kb on - strand, within BWI76_RS07530at 1594.397 kb on + strand, within BWI76_RS07530at 1594.521 kb on - strand, within BWI76_RS07530at 1594.597 kb on + strand, within BWI76_RS07530at 1594.808 kb on + strand, within BWI76_RS07535at 1594.828 kb on + strand, within BWI76_RS07535at 1594.964 kb on - strand, within BWI76_RS07535at 1595.181 kb on - strand, within BWI76_RS07535at 1595.470 kb on + strand, within BWI76_RS07535at 1595.554 kb on + strand, within BWI76_RS07535at 1595.608 kb on + strand, within BWI76_RS07535at 1595.608 kb on + strand, within BWI76_RS07535at 1595.783 kb on - strandat 1595.824 kb on + strandat 1595.892 kb on - strand, within BWI76_RS07540at 1596.345 kb on + strand, within BWI76_RS07540at 1596.422 kb on + strand, within BWI76_RS07540at 1596.548 kb on + strand, within BWI76_RS07540at 1596.627 kb on + strand, within BWI76_RS07540

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,593,775 + +0.1
1,593,808 + -0.5
1,594,222 + BWI76_RS07530 0.47 +0.9
1,594,316 - BWI76_RS07530 0.57 +0.4
1,594,397 + BWI76_RS07530 0.66 -0.2
1,594,521 - BWI76_RS07530 0.80 -1.1
1,594,597 + BWI76_RS07530 0.88 +1.0
1,594,808 + BWI76_RS07535 0.10 -0.1
1,594,828 + BWI76_RS07535 0.12 -0.7
1,594,964 - BWI76_RS07535 0.25 -0.6
1,595,181 - BWI76_RS07535 0.46 -0.8
1,595,470 + BWI76_RS07535 0.73 -0.0
1,595,554 + BWI76_RS07535 0.82 -0.7
1,595,608 + BWI76_RS07535 0.87 +0.1
1,595,608 + BWI76_RS07535 0.87 -0.5
1,595,783 - +0.6
1,595,824 + -0.3
1,595,892 - BWI76_RS07540 0.15 -0.2
1,596,345 + BWI76_RS07540 0.60 -0.2
1,596,422 + BWI76_RS07540 0.68 +0.8
1,596,548 + BWI76_RS07540 0.80 +1.1
1,596,627 + BWI76_RS07540 0.88 -1.2

Or see this region's nucleotide sequence