Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS33715

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS33710 and AZOBR_RS33715 are separated by 100 nucleotidesAZOBR_RS33715 and AZOBR_RS33720 are separated by 308 nucleotides AZOBR_RS33710: AZOBR_RS33710 - putative aminotransferase, at 91,186 to 92,439 _RS33710 AZOBR_RS33715: AZOBR_RS33715 - hypothetical protein, at 92,540 to 92,836 _RS33715 AZOBR_RS33720: AZOBR_RS33720 - UDP-glucose 6-dehydrogenase, at 93,145 to 94,470 _RS33720 Position (kb) 92 93Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 91.955 kb on - strand, within AZOBR_RS33710at 91.955 kb on - strand, within AZOBR_RS33710at 91.957 kb on + strand, within AZOBR_RS33710at 91.957 kb on + strand, within AZOBR_RS33710at 91.958 kb on - strand, within AZOBR_RS33710at 91.958 kb on - strand, within AZOBR_RS33710at 91.984 kb on + strand, within AZOBR_RS33710at 91.985 kb on - strand, within AZOBR_RS33710at 92.078 kb on - strand, within AZOBR_RS33710at 92.251 kb on + strand, within AZOBR_RS33710at 92.251 kb on + strand, within AZOBR_RS33710at 92.252 kb on - strand, within AZOBR_RS33710at 92.275 kb on + strand, within AZOBR_RS33710at 92.326 kb on + strandat 92.326 kb on + strandat 92.327 kb on - strandat 92.892 kb on + strandat 92.892 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
remove
91,955 - AZOBR_RS33710 0.61 -4.4
91,955 - AZOBR_RS33710 0.61 -4.8
91,957 + AZOBR_RS33710 0.61 -4.0
91,957 + AZOBR_RS33710 0.61 -3.6
91,958 - AZOBR_RS33710 0.62 -4.2
91,958 - AZOBR_RS33710 0.62 -3.0
91,984 + AZOBR_RS33710 0.64 -4.5
91,985 - AZOBR_RS33710 0.64 -1.1
92,078 - AZOBR_RS33710 0.71 -5.6
92,251 + AZOBR_RS33710 0.85 -3.2
92,251 + AZOBR_RS33710 0.85 -3.8
92,252 - AZOBR_RS33710 0.85 -4.0
92,275 + AZOBR_RS33710 0.87 -3.9
92,326 + -4.1
92,326 + -3.2
92,327 - -1.7
92,892 + -0.9
92,892 + -0.6

Or see this region's nucleotide sequence