Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS31410

Experiment: L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS31405 and AZOBR_RS31410 are separated by 401 nucleotidesAZOBR_RS31410 and AZOBR_RS31415 are separated by 94 nucleotides AZOBR_RS31405: AZOBR_RS31405 - C4-dicarboxylate ABC transporter permease, at 413,555 to 414,043 _RS31405 AZOBR_RS31410: AZOBR_RS31410 - aldo/keto reductase, at 414,445 to 415,506 _RS31410 AZOBR_RS31415: AZOBR_RS31415 - GntR family transcriptional regulator, at 415,601 to 416,383 _RS31415 Position (kb) 414 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 413.867 kb on + strand, within AZOBR_RS31405at 413.867 kb on + strand, within AZOBR_RS31405at 413.904 kb on - strand, within AZOBR_RS31405at 413.904 kb on - strand, within AZOBR_RS31405at 413.904 kb on - strand, within AZOBR_RS31405at 413.904 kb on - strand, within AZOBR_RS31405at 413.904 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 413.907 kb on - strand, within AZOBR_RS31405at 414.308 kb on + strandat 414.344 kb on + strandat 414.344 kb on + strandat 414.344 kb on + strandat 414.344 kb on + strandat 414.344 kb on + strandat 414.344 kb on + strandat 414.345 kb on - strandat 414.345 kb on - strandat 414.803 kb on + strand, within AZOBR_RS31410at 414.803 kb on + strand, within AZOBR_RS31410at 414.804 kb on - strand, within AZOBR_RS31410at 414.804 kb on - strand, within AZOBR_RS31410at 414.804 kb on - strand, within AZOBR_RS31410at 414.914 kb on + strand, within AZOBR_RS31410at 414.993 kb on - strand, within AZOBR_RS31410at 414.993 kb on - strand, within AZOBR_RS31410at 415.010 kb on + strand, within AZOBR_RS31410at 415.011 kb on - strand, within AZOBR_RS31410at 415.011 kb on - strand, within AZOBR_RS31410at 415.011 kb on - strand, within AZOBR_RS31410at 415.011 kb on - strand, within AZOBR_RS31410at 415.094 kb on + strand, within AZOBR_RS31410at 415.109 kb on + strand, within AZOBR_RS31410at 415.110 kb on - strand, within AZOBR_RS31410at 415.110 kb on - strand, within AZOBR_RS31410at 415.157 kb on + strand, within AZOBR_RS31410at 415.157 kb on + strand, within AZOBR_RS31410at 415.157 kb on + strand, within AZOBR_RS31410at 415.157 kb on + strand, within AZOBR_RS31410at 415.158 kb on - strand, within AZOBR_RS31410at 415.158 kb on - strand, within AZOBR_RS31410at 415.158 kb on - strand, within AZOBR_RS31410at 415.158 kb on - strand, within AZOBR_RS31410at 415.182 kb on - strand, within AZOBR_RS31410at 415.182 kb on - strand, within AZOBR_RS31410at 415.202 kb on + strand, within AZOBR_RS31410at 415.203 kb on - strand, within AZOBR_RS31410at 415.304 kb on + strand, within AZOBR_RS31410at 415.304 kb on + strand, within AZOBR_RS31410at 415.305 kb on - strand, within AZOBR_RS31410at 415.305 kb on - strand, within AZOBR_RS31410at 415.305 kb on - strand, within AZOBR_RS31410at 415.305 kb on - strand, within AZOBR_RS31410at 415.305 kb on - strand, within AZOBR_RS31410at 415.457 kb on + strandat 415.494 kb on - strandat 415.557 kb on - strandat 415.687 kb on - strand, within AZOBR_RS31415at 415.687 kb on - strand, within AZOBR_RS31415at 415.687 kb on - strand, within AZOBR_RS31415at 415.687 kb on - strand, within AZOBR_RS31415at 416.178 kb on + strand, within AZOBR_RS31415at 416.179 kb on - strand, within AZOBR_RS31415at 416.259 kb on + strand, within AZOBR_RS31415at 416.259 kb on + strand, within AZOBR_RS31415

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C) and no Nitrogen; normal Wolfe's minerals with nitroloacetic acid; 3 days
remove
413,867 + AZOBR_RS31405 0.64 +2.4
413,867 + AZOBR_RS31405 0.64 +0.2
413,904 - AZOBR_RS31405 0.71 +1.0
413,904 - AZOBR_RS31405 0.71 +0.5
413,904 - AZOBR_RS31405 0.71 -3.5
413,904 - AZOBR_RS31405 0.71 -0.6
413,904 - AZOBR_RS31405 0.71 +0.0
413,907 - AZOBR_RS31405 0.72 -1.1
413,907 - AZOBR_RS31405 0.72 -0.5
413,907 - AZOBR_RS31405 0.72 +0.4
413,907 - AZOBR_RS31405 0.72 -0.1
413,907 - AZOBR_RS31405 0.72 -0.5
413,907 - AZOBR_RS31405 0.72 +0.4
413,907 - AZOBR_RS31405 0.72 +0.6
413,907 - AZOBR_RS31405 0.72 +0.3
414,308 + -0.6
414,344 + +0.2
414,344 + -2.7
414,344 + +0.4
414,344 + +0.6
414,344 + -0.3
414,344 + -0.5
414,345 - +0.8
414,345 - -0.5
414,803 + AZOBR_RS31410 0.34 -0.0
414,803 + AZOBR_RS31410 0.34 -1.3
414,804 - AZOBR_RS31410 0.34 -1.0
414,804 - AZOBR_RS31410 0.34 -0.1
414,804 - AZOBR_RS31410 0.34 -0.0
414,914 + AZOBR_RS31410 0.44 -0.6
414,993 - AZOBR_RS31410 0.52 -0.6
414,993 - AZOBR_RS31410 0.52 -0.6
415,010 + AZOBR_RS31410 0.53 +0.2
415,011 - AZOBR_RS31410 0.53 -0.6
415,011 - AZOBR_RS31410 0.53 -0.2
415,011 - AZOBR_RS31410 0.53 -0.0
415,011 - AZOBR_RS31410 0.53 -0.4
415,094 + AZOBR_RS31410 0.61 -0.2
415,109 + AZOBR_RS31410 0.63 +0.0
415,110 - AZOBR_RS31410 0.63 -0.2
415,110 - AZOBR_RS31410 0.63 -0.0
415,157 + AZOBR_RS31410 0.67 +0.2
415,157 + AZOBR_RS31410 0.67 +0.4
415,157 + AZOBR_RS31410 0.67 +0.2
415,157 + AZOBR_RS31410 0.67 -1.9
415,158 - AZOBR_RS31410 0.67 +0.7
415,158 - AZOBR_RS31410 0.67 +0.3
415,158 - AZOBR_RS31410 0.67 -0.7
415,158 - AZOBR_RS31410 0.67 -0.4
415,182 - AZOBR_RS31410 0.69 +0.5
415,182 - AZOBR_RS31410 0.69 -1.2
415,202 + AZOBR_RS31410 0.71 -1.5
415,203 - AZOBR_RS31410 0.71 +0.5
415,304 + AZOBR_RS31410 0.81 +0.1
415,304 + AZOBR_RS31410 0.81 -1.6
415,305 - AZOBR_RS31410 0.81 -1.7
415,305 - AZOBR_RS31410 0.81 -1.2
415,305 - AZOBR_RS31410 0.81 -0.0
415,305 - AZOBR_RS31410 0.81 -1.4
415,305 - AZOBR_RS31410 0.81 -0.5
415,457 + +1.1
415,494 - -0.6
415,557 - +0.1
415,687 - AZOBR_RS31415 0.11 -0.6
415,687 - AZOBR_RS31415 0.11 -0.4
415,687 - AZOBR_RS31415 0.11 -0.4
415,687 - AZOBR_RS31415 0.11 -2.0
416,178 + AZOBR_RS31415 0.74 -0.8
416,179 - AZOBR_RS31415 0.74 -0.2
416,259 + AZOBR_RS31415 0.84 -0.6
416,259 + AZOBR_RS31415 0.84 -0.3

Or see this region's nucleotide sequence